Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0050 ATGACAGCCCACTTTATTCTACACATACATCTAAAAGAAAAGCAATATAATCTATTTGACCAGGTCTTAGCAGTTTTTCTTGTCATTATAGTTACAGCTGTCAGTGATTATCGGCAATCTCTGCAGTTTCAGAATTTGAATGCAGAAAAACAAAATATTCAATTGGAGGTCATTAGAGGTGGTAGAACAGTTAAGATATCAATATTTGATATTGTTGTTGGTGACGTTGTGCCTCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTTTTAATCGCTGGCCACTCACTTGCCATGGATGAATCCAGCATGACTGGTGAAAGCAAGATTGTTCACAAGGATCACAAAGCACCCTTTTTGATGTCTGGCTGCAAAGTAGCAGATGGAGTTGGTGCTATGCTGGTAACTGGTGTTGGTATCAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGGGAAGAGACTCCGTTACAGGTACGTTTGAATGGAGTGGCGACTTTTATTGGCATAGTTGGGCTTTCAGTAGCGGTTTCTGTGCTGGCAGTTCTCTTGGGCAGATACTTTTCTGGCCATTCGAGGGATGTAAATGGAAATGTCCAATTTGTTGCTGGAAAGACTAGTATTAGTGATGCAGTAGACGAGTGTAAAAGATTTTTGACTAAATATAGAGCCATACAGGTCACAATTGTAGTTGTTGCAGTGCCTGAAGGTCTTCCCTTGGCTGTTACCTTAACCCTGGCTTACTCAATGCGAAAAATGATGGCAGACAAAGCCTTGATGACTGTGGTAGAGGCATACGTTGGGAGGAAGAAAATAGATCCGGCAGATGACTCATCAAAGTTGCACCCGGAAGTTTTATCTCTGATAAATGAAGGCATTGCACAGAATACTAGTGGAAATGTTTTTGAGCCTAAGGGTGGTGGAGATGTAGAGGTTTCAGGATCTCCTACAGAAAAGGCAATCCTTTCTTGGGCAGTCAAGTTGGGAATGAAATTCAATCGTATCAGATCAAATTCAACAATTCTACATGTCTTTCCCTTCAATTCTGAGAAGAAGCGAGGTGGTGTAGCGCTGAAGCTGGGGGACTCTGGAGTACATATACATTGGAAAGGAGCTGCGGAGATAGTTGTAGGCGCATGTACTCAATATCTTGATTCAAATGGTGTCTCGCAATCGATTGAAGAAGAGCAGGACTTTTTCAAGGAAGCTATTGATGACATGGCTGCTCGCAGCTTGCGGTGTGTTGCCATTGCATACAGATCATATGAATTGGAGAAAATTCCCTCTAATGAGGATTTGGACCAGTGGTCCTTACCTGAGCATGAGCTTGTTTTGCTTGCCATTGTTGGTATAAAGGATCCCTGCCGCCCTGGAGTCAAAGATGCAGTCAGAGTATGCACTGAAGCTGGTGTTAAGGTACGCATGGTTACCGGAGACAATCTTCAGACGGCAAAGGCAATAGCTTTGGAGTGTGGGATACTGGCTTCAAATGAAGAAGCTGTTGAGCCACGTATAATTGAAGGACAGACATTCCGTGTCTTATCTGAAAAGGAAAGGGAACAAGTTGCTAAAAAAATAATAGTGATGGGGAGGTCTTCTCCTAACGACAAGCTTTTGCTTGTGCAAGCACTACGTAAGGGAGGTGAAGTTGTTGCTGTCACAGGAGACGGTACCAATGATGCTCCTGCGCTTCATGAGGCAGATATTGGTCTTTCAATGGGTATTCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATTCTGGATGATAACTTTGCATCAGTAGTGAAGGTTGTCCGATGGGGCCGTTCTGTATATGCGAATATTCAGAAATTTATCCAGTTCCAACTCACTGTTAATGTTGCAGCTCTTGTAATTAATGTTGTGGCAGCAGTGTCTTCTGGTGGTGTTCCCTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTAGGGGCCCTTGCACTGGCTACTGAACCACCAACAGACCATCTTATGAACAGATCACCTGTTGGCAGAAGGGAATCTCTGATAACGAATGTCATGTGGAGGAACTTGTTCGTACAGGCTCTATATCAAATTACTGTTCTCCTTGTTCTTAACTTCTGTGGCGAAAAAATTCTACATAGTCATGGTTCTAGAGCCCATATCTTTAAAGTGAAGAATACTTTAATATTCAATGCATTTGTCCTCTGCCAAATATTCAATGAGTTCAATGCCCGTAAACCAGATGAAATGAATGTCTTCAGGGGAGTGACTAAGAACCACCTCTTCATGGGAATTGTCGGAGTGACCTTTGTACTTCAGATACTTATCATTGAGTTCCTCGGAAAGTTCACCTCAACGGTGAGGCTTGATTGGAGGCTGTGGCTTGTTTCTATATGTATAGGACTCATCAGCTGGCCTCTTGCCATAGCTGGAAAGTTCATTCCAGTTTCAAAAACACCATTGTCCCGATACTTGTTGAAGCCATTGAGGCGATGCAGGAGGCCTCATGCTACGCAATAG 2535 0.4292 MTAHFILHIHLKEKQYNLFDQVLAVFLVIIVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRTVKISIFDIVVGDVVPLKIGDQVPADGVLIAGHSLAMDESSMTGESKIVHKDHKAPFLMSGCKVADGVGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVSVLAVLLGRYFSGHSRDVNGNVQFVAGKTSISDAVDECKRFLTKYRAIQVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALMTVVEAYVGRKKIDPADDSSKLHPEVLSLINEGIAQNTSGNVFEPKGGGDVEVSGSPTEKAILSWAVKLGMKFNRIRSNSTILHVFPFNSEKKRGGVALKLGDSGVHIHWKGAAEIVVGACTQYLDSNGVSQSIEEEQDFFKEAIDDMAARSLRCVAIAYRSYELEKIPSNEDLDQWSLPEHELVLLAIVGIKDPCRPGVKDAVRVCTEAGVKVRMVTGDNLQTAKAIALECGILASNEEAVEPRIIEGQTFRVLSEKEREQVAKKIIVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGGVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMNRSPVGRRESLITNVMWRNLFVQALYQITVLLVLNFCGEKILHSHGSRAHIFKVKNTLIFNAFVLCQIFNEFNARKPDEMNVFRGVTKNHLFMGIVGVTFVLQILIIEFLGKFTSTVRLDWRLWLVSICIGLISWPLAIAGKFIPVSKTPLSRYLLKPLRRCRRPHATQ 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0050 844 SUPERFAMILY Calcium ATPase, transduction domain A 54 149 IPR008250 -
Glsi07g0050 844 SUPERFAMILY Calcium ATPase, transmembrane domain M 23 822 IPR023298 -
Glsi07g0050 844 NCBIfam HAD-IC family P-type ATPase 525 640 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi07g0050 844 PRINTS H+-transporting ATPase (proton pump) signature 404 422 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi07g0050 844 PRINTS H+-transporting ATPase (proton pump) signature 590 615 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi07g0050 844 PRINTS H+-transporting ATPase (proton pump) signature 558 574 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi07g0050 844 Pfam haloacid dehalogenase-like hydrolase 392 572 - -
Glsi07g0050 844 FunFam Calcium-transporting ATPase 31 152 - -
Glsi07g0050 844 FunFam Calcium-transporting ATPase 575 823 - -
Glsi07g0050 844 Pfam E1-E2 ATPase 53 258 - -
Glsi07g0050 844 Gene3D - 54 132 - -
Glsi07g0050 844 Pfam Cation transport ATPase (P-type) 309 386 - -
Glsi07g0050 844 SUPERFAMILY HAD-like 401 663 IPR036412 -
Glsi07g0050 844 Gene3D - 571 824 - -
Glsi07g0050 844 PRINTS P-type cation-transporting ATPase superfamily signature 558 577 - -
Glsi07g0050 844 PRINTS P-type cation-transporting ATPase superfamily signature 582 594 - -
Glsi07g0050 844 PRINTS P-type cation-transporting ATPase superfamily signature 451 462 - -
Glsi07g0050 844 PRINTS P-type cation-transporting ATPase superfamily signature 100 114 - -
Glsi07g0050 844 PRINTS P-type cation-transporting ATPase superfamily signature 473 483 - -
Glsi07g0050 844 NCBIfam calcium-translocating P-type ATPase, PMCA-type 292 821 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Glsi07g0050 844 FunFam Calcium-transporting ATPase 262 458 - -
Glsi07g0050 844 Pfam Cation transporting ATPase, C-terminus 643 818 IPR006068 -
Glsi07g0050 844 Gene3D - 267 458 IPR023299 GO:0000166
Glsi07g0050 844 FunFam Calcium-transporting ATPase 451 603 - -
Glsi07g0050 844 Gene3D - 133 266 - -
Glsi07g0050 844 PANTHER CATION TRANSPORTING ATPASE 7 821 - -
Glsi07g0050 844 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 264 463 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0050 Glsi-ChrGlsi07 369647 378806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0050 11 838 Primary Pumps ATPases AT3G21180 75.758 0.0 1281