Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0047 ATGGGTGCTTGTACACATCGCTATCTATGTGCGCGGTGGCTTGTGCTTATTTGGTTCAACAGAGCCTGCGCAGACCTTGGCTCAGTAGAGATGGGTGAGGAGGTTAAGGCAATTGTTCCAGAGTCTGTGTTGAAGAAGCAGAAGAGGGAAGAGGAATGGGCATTAGCTAAAACACAGGAGTTTGAAGCTGCAAAGAAGAAGAGGGCTGAGAACCGTAAGCTGATCTACAACAGAGCTAAGCAGTATACCAAGGAGTATGAGGAGCAAGAAAAGGAATTGATTAGATTGAAACGTGAGGCAAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCTAAACTCTTATTTATTATTCGCATCCGCGGTATTAATGCCATGCACCCAAAGACAAGAAAGATCTTGCAGCTCTTGCGATTGAGACAGATTTTCAATGGTGTATTTCTTAAAGTTAACAAAGCTACAATGAACATGCTGCACAGAGTTGAACCTTATGTGACTTATGGATACCCAAATCTGAAGAGTGTACGAGAACTTATTTACAAAAGGGGCTATGGTAAGCTCGACAAGCAGAGAGTTGCGCTAACTGACAACTCCATCGTTGAGCAGGCACTGGGTAAGTATGGAATCATATGCACTGAAGATCTTATTCATGAGATCATAACGGTTGGACCACATTTTAAGCAGGCCAACAACTTCCTTTGGCCATTTAAGCTGAAGGCACCTTTGGGTGGACTAAAGAAGAAGAGAAACCACTATGTCGAAGGAGGTGATGCTGGAAACCGGGAGAATTACATTAATGAGCTCATCAGAAGAATGAACTAG 822 0.4331 MGACTHRYLCARWLVLIWFNRACADLGSVEMGEEVKAIVPESVLKKQKREEEWALAKTQEFEAAKKKRAENRKLIYNRAKQYTKEYEEQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRVALTDNSIVEQALGKYGIICTEDLIHEIITVGPHFKQANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0047 273 ProSitePatterns Ribosomal protein L30 signature. 133 165 IPR018038 -
Glsi07g0047 273 Pfam Ribosomal L30 N-terminal domain 39 110 IPR012988 -
Glsi07g0047 273 PANTHER 60S RIBOSOMAL PROTEIN L7 37 273 IPR039699 -
Glsi07g0047 273 FunFam 60S ribosomal protein L7 114 218 - -
Glsi07g0047 273 FunFam 60S ribosomal protein L7 219 273 - -
Glsi07g0047 273 Coils Coil 72 103 - -
Glsi07g0047 273 Pfam Ribosomal protein L30p/L7e 115 165 IPR016082 -
Glsi07g0047 273 Gene3D - 114 216 IPR036919 -
Glsi07g0047 273 Gene3D - 217 273 IPR036919 -
Glsi07g0047 273 SUPERFAMILY Ribosomal protein L30p/L7e 114 273 IPR036919 -
Glsi07g0047 273 CDD Ribosomal_L7_archeal_euk 114 273 IPR035808 -
Glsi07g0047 273 NCBIfam 60S ribosomal protein uL30 40 273 IPR005998 GO:0000463|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0047 Glsi-ChrGlsi07 353124 356051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0047 34 273 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.417 1.04e-154 429