Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0018 ATGAAAACCCCAGCTTTAATCACCACAGAATGTTATGCCATGAGTCACTGTTTGACGCAAAATAAGCATCCTAAAAATCCCAATCAAACAAAACAACCACATGCAGTCGAATCCCAGCTTCCTCCTTGGCACCATTATCTGGGTTTTGGGTCTCTTGTCCCCTCAACATTGCTAATGGGCGCGCACGCTGCTTTGCTAGTGCGCGCACCTGCAGCATCCATCAATGTCAAGCTCTTCAGCGTCCTTCTTGTTTTCATGCTATCATGTGCAACCATGTCCTCCTCTGACAAGGCCGATGCCAAGGCCCTCTTGAAGTTCAGGGAATCTTTGACCAATGTCGTTGCCCTCAGCAGCTGGGATCCCTCCATAAACCCGAAGCCACCTTGTTCTGCCAACATCCCCAATTGGGTTGGCCTCTTCTGTCTTAATGACAACGTCTGGGGCTTGCGCCTCGAAAACATGGGACTCACGGGCAAGATAGATGTTGACTCCCTTGTTTCCATGCCCCATCTCCGCACTATTAGCTTAATGAATAATACCTTTGTGGGTCCTATGCCTAACATTAAGGTGCTGAAAAATTTGAAGTCTCTATACTTATCCTATAATCATTTCTCCGGAGAGATACCCGACGATGCATTCGCGGGTATGAATATGCTGAAGAAAGTTTATTTGGCCAATAACGAGTTCACTGGTAAAATCCCTTCATCCCTTTCCGTCTTGCCTAACCTCGTGGTGGTGAGGCTTGACTCCAACAAGTTTTATGGACAAATTCCACATTTTCAACGCAGCACATTGAAGAAGATCGACCTCTCTAACAATGAATTAGAGGGTCCCATCCCCACCAATCTAAGCACCTTCGAGGCCAGCTCCTTTTCGGGCAACGCACATCTGTGTGGGACACCTTTGAATCAATGCCCAGCAGCATCCCCAATCCCATTGGCATCCCTGCAGACTTCAACAGGGTCAGGGCCTTTCATTCTGAAAATTATGCTTCTTGTGATGGTGGCAGCATTAATAATAGCCCTCATCGTTGCAGCAATCATTATATCCCGCTTGAGGTCAAAGCAAATAAGCCAGCAATACTCAGATCATCCTGTCTCAACGTTTCAAGCCCAAGCCTCTAATAGGTATGTTCCTCCTGTTTATGTGAAAAGCAAAAGCAAAGCCGAACGTGATGCAAATCAGACCATGACCCATCATGCACATTCAAAGAAGGGGGAGCAAGGAAAGTTGACATTTGTGAGGGATGACCAAAAGAGGTTTGATTTACAAGATTTGCTCACAGCCTCTGCTGAAATTCTTGGTAGTGCCGCATTCGGGTCTTCCTATAAGGCCGTGATTAATGACGGCCAAGCCGTGGTCGTGAAAAGGTACAAGCAAATGAACAATGTGGGAAGAGAAGAGTTCTATGAGCACATGAGAAGGCTTGGGAACCTCTCCCATCCCAATCTTCTCCCTCTTATGGCCTATTATTATAGGAAAGAAGAGAAGCTCTTGCTCTCTGACTTTGTTGACAAGGGTTGCTTAGCCAGCAATCTCCATGGTAATCGTAACCATGAACAACCCGGGCTTGATTGGCCAACTCGGTTGAAAATTGTGAAAGGTGTAGCCAGGGGGTTGGCTTACCTATACAATGCCCTCCCAAGCCTAGTTGTGCCTCATGGTCATCTCAAATCTTCCAATGTTCTTCTGGATGAATCTTATGAGCCTCTAGTCACCGATTATGCCCTTATTCCTGTGATCAACCTTGATCATGCCCAGCAAATCATGATGCCTTACAAATCACCCGAGTATGCACAACTTGGCCGCATAACCAAGAAGACTGACGTGTGGAGTCTCGGAATTCTTATACTGGAGATCTTAACTGGCAAGTTCCCAGAGAACTATCTCACACACAGGCATAACACTAATTCAGACATCGCTAGTTGGGTCAATTCCATGGTTACTGATAAGCGCACTGGTGATGTGTTTGATGTTGACATGGGAGGAGTTGGGAATAGTAAAGGCGAATTGCTCAAACTCTTAAAGATTGGCTTGAGTTGTTGTGAGGAGAATGTGGAAAGGAGATTGGATATCAAGGAAGCTCTCGAGCAGATTGAAGAGTTGAAAGATTGTGAGAAGGATGGAGATTATTCTTTATTTGTGACTAGCGAACGGGATGCTTTTAGAGCTTAG 2175 0.4584 MKTPALITTECYAMSHCLTQNKHPKNPNQTKQPHAVESQLPPWHHYLGFGSLVPSTLLMGAHAALLVRAPAASINVKLFSVLLVFMLSCATMSSSDKADAKALLKFRESLTNVVALSSWDPSINPKPPCSANIPNWVGLFCLNDNVWGLRLENMGLTGKIDVDSLVSMPHLRTISLMNNTFVGPMPNIKVLKNLKSLYLSYNHFSGEIPDDAFAGMNMLKKVYLANNEFTGKIPSSLSVLPNLVVVRLDSNKFYGQIPHFQRSTLKKIDLSNNELEGPIPTNLSTFEASSFSGNAHLCGTPLNQCPAASPIPLASLQTSTGSGPFILKIMLLVMVAALIIALIVAAIIISRLRSKQISQQYSDHPVSTFQAQASNRYVPPVYVKSKSKAERDANQTMTHHAHSKKGEQGKLTFVRDDQKRFDLQDLLTASAEILGSAAFGSSYKAVINDGQAVVVKRYKQMNNVGREEFYEHMRRLGNLSHPNLLPLMAYYYRKEEKLLLSDFVDKGCLASNLHGNRNHEQPGLDWPTRLKIVKGVARGLAYLYNALPSLVVPHGHLKSSNVLLDESYEPLVTDYALIPVINLDHAQQIMMPYKSPEYAQLGRITKKTDVWSLGILILEILTGKFPENYLTHRHNTNSDIASWVNSMVTDKRTGDVFDVDMGGVGNSKGELLKLLKIGLSCCEENVERRLDIKEALEQIEELKDCEKDGDYSLFVTSERDAFRA 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0018 724 FunFam Pollen receptor-like kinase 1 504 713 - -
Glsi07g0018 724 Pfam Leucine rich repeat N-terminal domain 97 141 IPR013210 -
Glsi07g0018 724 FunFam pollen receptor-like kinase 1 397 503 - -
Glsi07g0018 724 Gene3D Ribonuclease Inhibitor 96 261 IPR032675 -
Glsi07g0018 724 ProSiteProfiles Protein kinase domain profile. 428 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0018 724 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 83 707 IPR046959 -
Glsi07g0018 724 Pfam Leucine rich repeat 193 253 IPR001611 GO:0005515
Glsi07g0018 724 Pfam Protein tyrosine and serine/threonine kinase 432 631 IPR001245 GO:0004672|GO:0006468
Glsi07g0018 724 SUPERFAMILY Protein kinase-like (PK-like) 432 702 IPR011009 -
Glsi07g0018 724 Gene3D Transferase(Phosphotransferase) domain 1 504 718 - -
Glsi07g0018 724 MobiDBLite consensus disorder prediction 388 407 - -
Glsi07g0018 724 SUPERFAMILY L domain-like 126 286 - -
Glsi07g0018 724 Gene3D Phosphorylase Kinase; domain 1 392 503 - -
Glsi07g0018 724 Gene3D Ribonuclease Inhibitor 263 305 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0018 Glsi-ChrGlsi07 192201 194843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0018 71 721 Receptor kinase-like Gene Family AT5G35390 49.242 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi07g0018 PK_Tyr_Ser-Thr 4.1e-26 CL0016