Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g0017 ATGCACCACAACCTCGCAGGGTTGTGGATTGCTTTGCTCGCGGTCTTCATCACCGCAGTTCAATGCAAGACTGCCTCCCAAGATGTTTCAGCGCTTAATGTGATGTACAGCAGCTTAAATTCTCCAAAACTGGAAGGCTGGAAATCAAGTGGAGGTGATCCTTGTGGCGACTCATGGGAAGGAATTGAATGCTCAGGTTCATCTGTCACAGAAATAAATTTGTCTGGTAGGGGACTTACTGGATCAATGGGCTACCAGCTCTCAAATTTGGCCTCAGTTACCGACTTAGATCTTTCCAAGAATGCCTTCACTGGAGGTGTTCCTTATTCCATCTCTCAGATGAGTGACCTCGAAAACCTAAATCTTGCACATAATCGGCTCAATAATCAGTTGAGTGATATGTTTGAGAAACTCACTAAACTCAAACAACTGCATCTGCAAAACAATCAATTCTCTGGTTCAATAAATGTGCTTGCCAACCTTCCACTTGAAGATCTGAATGTTGAAAATAACGAATTTACTGGTTGGATCCCTGAGCAGTTAAAGGATATACGTAGCTTGCAAACTGGAGGAAATTCTTGGTCATCAGGGCCAGCTCCTCCTCCTCCTCCTGGTACACCCCCTATCAAGCATTCTAGAAAACAGAATGAGAACAATTCCAAGAAATCTATTGTTTTTGGATTAGCTATAGCAGGCGTAGCTTTGGGGATACTCATACTAATTGTAGCGATGATTGCTGTTGTTAAAAGAAAATCGTCTGCGCCTTCTTCAAATTTTCTTGATGAAGGGCATAGCGGTCGTAGATCCTTTACCCCTCTTGCATCTCAGGAATTATCCAAAGATTCTGGTGGTGATGCTTACAAAGCAGTGGATTCTGCTTCAATTGACATAAAGGCATTGCAAAAAATTCCATCCATTGGTGTAAGATCATCAGTATCTGATTGCGTACAATCCTTTAACGATAATGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGCACCTCGGTTCGCGCTCCTGCTTTTCCATTGGTAGATTTGCAGACTGCTACTGCTAATTTTTCATCAGGTCGGCTTCTTGGTCAAGGATCCATTGGAAGTGTATATCGGGCCAAATATGGGGATGGAAAGGTTTTTGCTGCGAAAAGAATTGACCCTACACTTTTCCATGACGCCTCTCCAGAGCAATTCAATGACATAATTTCAAACGTTTCCAAGCTTCACCACCCAAACATTGCTGAGCTTGTTGGTTTTTGTTCAGAACAGGGACAGTACCTGTTAGTATACGAGTATTTCAGAAACGGCTCTCTTCATGAATTTTTACATTTATCAGATGACTTCAGCAAACCTCTAACATGGAACACCAGAGTCAGAATCGCACTGGGCACAGCTCGAGCTGTTGAGTACCTGCATGAAATTTGTTCTCCATCTTTAGTTCACAAGAACATCAAGTCTTCAAATATTCTGCTTGACGCTGAACTCAATCCACACCTCTCAGACTATGGTCTGGCATCCTTCCACCAGCGTACAAGCCAAAATCTCGGGGCAGGATATAATGCACCAGAGTGCACAAAACCTTCAGCCTATACCCTCAAGAGTGACGTATACAGTTTTGGGGTAGTGATGTTGGAGCTGTTAACAGGTCGAATGCCTTTCGACAGTTCAAAGCCAAAATCGGAACAATGTCTTGTTCGTTGGGCACCCCCACAGCTTCATGACATTGATGCATTGGAAAAAATGGTGGATCCTGCCTTGCGAGGACTTTACCCTCCTAAGTCAGTCTCACGATTTGCTGATATTATCGCTCTTTGTGTTCAGTCCGAGTCCGAATTTCGGCCACCCATGTCAGAAGTGGTTCAGGCATTGGTACGACTAGTTCAGCACTCAAATATGAGCATGAGAGAGGATCTTGGTGCTTCTCGTGGGATGGATGATTATGATGATTGA 1944 0.4352 MHHNLAGLWIALLAVFITAVQCKTASQDVSALNVMYSSLNSPKLEGWKSSGGDPCGDSWEGIECSGSSVTEINLSGRGLTGSMGYQLSNLASVTDLDLSKNAFTGGVPYSISQMSDLENLNLAHNRLNNQLSDMFEKLTKLKQLHLQNNQFSGSINVLANLPLEDLNVENNEFTGWIPEQLKDIRSLQTGGNSWSSGPAPPPPPGTPPIKHSRKQNENNSKKSIVFGLAIAGVALGILILIVAMIAVVKRKSSAPSSNFLDEGHSGRRSFTPLASQELSKDSGGDAYKAVDSASIDIKALQKIPSIGVRSSVSDCVQSFNDNEFANRLNARRSTSVRAPAFPLVDLQTATANFSSGRLLGQGSIGSVYRAKYGDGKVFAAKRIDPTLFHDASPEQFNDIISNVSKLHHPNIAELVGFCSEQGQYLLVYEYFRNGSLHEFLHLSDDFSKPLTWNTRVRIALGTARAVEYLHEICSPSLVHKNIKSSNILLDAELNPHLSDYGLASFHQRTSQNLGAGYNAPECTKPSAYTLKSDVYSFGVVMLELLTGRMPFDSSKPKSEQCLVRWAPPQLHDIDALEKMVDPALRGLYPPKSVSRFADIIALCVQSESEFRPPMSEVVQALVRLVQHSNMSMREDLGASRGMDDYDD 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g0017 647 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 318 430 - -
Glsi07g0017 647 Gene3D Phosphorylase Kinase; domain 1 312 430 - -
Glsi07g0017 647 MobiDBLite consensus disorder prediction 187 217 - -
Glsi07g0017 647 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 431 635 - -
Glsi07g0017 647 SUPERFAMILY Protein kinase-like (PK-like) 334 621 IPR011009 -
Glsi07g0017 647 Gene3D Transferase(Phosphotransferase) domain 1 431 642 - -
Glsi07g0017 647 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 109 - -
Glsi07g0017 647 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Glsi07g0017 647 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 113 205 - -
Glsi07g0017 647 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 629 IPR046959 -
Glsi07g0017 647 ProSiteProfiles Leucine-rich repeat profile. 140 162 IPR001611 GO:0005515
Glsi07g0017 647 SUPERFAMILY L domain-like 23 188 - -
Glsi07g0017 647 Gene3D Ribonuclease Inhibitor 24 200 IPR032675 -
Glsi07g0017 647 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Glsi07g0017 647 ProSiteProfiles Protein kinase domain profile. 353 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g0017 647 Coils Coil 117 144 - -
Glsi07g0017 647 Pfam Protein kinase domain 354 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g0017 Glsi-ChrGlsi07 183412 187564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g0017 1 646 Strubbelig Receptor Gene Family AT1G78980 59.117 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Glsi07g0017 Pkinase 3.9e-40 CL0016