Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g2091 ATGGGCAACTGCGGTACTAGAGAGGAATCGGCTGTTGTCTCCAACGCTCAAGTTCAACAGCTGCACATGTCGTCCTTGCCTGCTAGAAGTACTGCCAACGAGAAGAAACACAATCGCTCTGTGTCAGATCTGAGCGACATTTCAACCCCACGCAACAACTTCGAGGATGCCAGAAAGAATACAGTCCTCTATACTCACGTCATTGCTTTTACACTGTACGAGCTCGAGACTATCACTAAGAGCTTCCGCTCCGATTATATCCTTGGAGAAGGTGGGTTCGGCACTGTCTATAAAGGTTACATTGACGAGAATGTGAGGGTTGGCCTCAAATCTCTCCCCGTTGCTGTGAAGGTTCTAAACAAGGAGGGCCTTCAGGGACATCGAGAGTGGCTCACGGAAGTCAATTTTCTCGGGCAGCTTAGGCATCCTAATTTGGTTAAGTTGATCGGATACTGCTGTGAGGACGATCACAGGCTGCTAGTATACGAGTTTATGTTTCGAGGAAGTCTAGAGAATCACCTGTTCCGAAAGGCAACTGTTCCTTTATCATGGGCTACAAGAATGATGATTGCCCTTGGAGCTGCCAAGGGGCTTGCTTTTCTTCACAATGCTGAAAGGCCAGTAATTTATCGAGACTTCAAAACATCTAATATATTATTAGACTCTGACTATACTGCCAAGCTTTCTGATTTTGGACTTGCAAAAGCTGGACCACAAGGTGATGAAACCCATGTGTCCACCCGGGTCATGGGTACCTATGGTTACGCTGCCCCTGAATATGTAATGACTGGCCACCTGACAGCAAGGAGCGATGTGTATAGCTTTGGAGTTGTTCTTTTAGAGCTTTTGACTGGAAGGAAATCAGTTGACAGGACAAGACCAGGCAAGGAACAGAGCTTGGTAGATTGGGCCCGGCCAAAGCTTAATGACAAGAGAAAGCTCCTGCAGATAATTGATCCTAGGTTGGAGAATCAATACTCGGTGAGGGCAGCACAGAAAGCATGTAGCTTGGCTTACTACTGTTTGAGTCAAAATCCCAAAGCAAGGCCATTAATGAGCGATGTAGTTGAGACATTGGAACCCTTACAAAGTTGTAGTGATGCTGCGGGTGAAGTGTCATCATCAGGTCCAAGTAGTGGAGGTGGAGGTCCCTTTGCTATGAGTGGAATCTCCGACTATCGGATGCGCCAGAGGTTTTCAAACAATGTTGGTCCAGGTGCTAGTTGTCGGTCTCCAAACCCAAACTGCTCACCAGGTGCCCCCGCAGCATGCAGGGTCAGATGA 1284 0.4759 MGNCGTREESAVVSNAQVQQLHMSSLPARSTANEKKHNRSVSDLSDISTPRNNFEDARKNTVLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDRTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSCSDAAGEVSSSGPSSGGGGPFAMSGISDYRMRQRFSNNVGPGASCRSPNPNCSPGAPAACRVR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g2091 427 MobiDBLite consensus disorder prediction 25 48 - -
Glsi06g2091 427 CDD STKc_IRAK 88 362 - -
Glsi06g2091 427 MobiDBLite consensus disorder prediction 401 415 - -
Glsi06g2091 427 MobiDBLite consensus disorder prediction 367 381 - -
Glsi06g2091 427 SUPERFAMILY Protein kinase-like (PK-like) 58 360 IPR011009 -
Glsi06g2091 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Glsi06g2091 427 PANTHER OS01G0588500 PROTEIN-RELATED 42 363 - -
Glsi06g2091 427 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2091 427 Gene3D Transferase(Phosphotransferase) domain 1 165 374 - -
Glsi06g2091 427 FunFam Serine/threonine-protein kinase BIK1 48 164 - -
Glsi06g2091 427 FunFam Probable serine/threonine-protein kinase PBL8 165 376 - -
Glsi06g2091 427 Gene3D Phosphorylase Kinase; domain 1 20 164 - -
Glsi06g2091 427 MobiDBLite consensus disorder prediction 367 387 - -
Glsi06g2091 427 MobiDBLite consensus disorder prediction 401 427 - -
Glsi06g2091 427 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Glsi06g2091 427 Pfam Protein tyrosine and serine/threonine kinase 87 359 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g2091 Glsi-ChrGlsi06 68016063 68019962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g2091 51 369 Glycoside Hydrolase AT3G07070 51.863 5.96e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi06g2091 PK_Tyr_Ser-Thr 4.7e-48 CL0016