LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g2087	ATGTTTGTGAATTATCATCTTATTGGCACGTTGGAATGCATTGCCTGGCTGATTTGTTGTTCCTTATGTAAATGGAAAGGACTCAAGGAGGGGATAGTGCTTACTTCCTTTTTGTTTTGGGATCCAATGGAAAAGTACGAGAAGCTGGAGAAGGTAGGAGAAGGGACTTACGGGAAGGTGTACAAGGCGATGGAGAAGGCCACAGGGCAATTGGTGGCTCTGAAGAAGACGCGTTTGGAGATGGACGAGGAGGGTGTTCCTCCAAGTGCACTCCGAGAAGTCTCCCTCCTTCAGATGCTCTCTCACTCCCTCTACGTTGTCCGTCTCCTCTGCGTCGAGCATGTCCATAAGACCCCCAAGGCTTCCTCCCTCCCTTCCAAGCCCCTCCTCTACCTCGTTTTCGAATACCTCGACACCGATCTCAAGAAGTTTATCGACTCCCACCGCAAGGTTCCCAACCCCACTCCCCTTCCGCCTTCCCTTATTCAGAACTTCCTCTTCCAGCTCTGCAAGGGCGTTGCTCATTGCCACAGCCACGGCGTCCTCCATCGCGATCTCAAACCCCAGAATCTTCTTCTTGACCAGCATAAGGGGGTTCTCAAGATCGCCGATCTTGGTCTCGGACGTGCTTTCACCGTTCCCCTAAAGAGCTACACCCACGAGATTGTCACTCTTTGGTATAGGGCACCCGAGGTTCTCTTGGGATCCACCCATTACTCCACTGGGGTTGACATGTGGTCCGTCGGATGTATTTTTGCTGAAATGGTGAGAAGGCAAGCTCTGTTTCCAGGTGATTCTGAGTTCCAACAGCTCCTTCATATATTCAGGTTGTTGGGAACTCCAACTGAGAAGGAATGGCCAAGTGTTACTTCTTTGCGGGACTGGCATGTCTACCCACAGTGGGAACCACAGAACTTGGCACGGGCTGTTCCATCCTTAGGACCTGATGGAGTAGACCTTCTTTCGAAAATGCTCAAGTATAACCCTGCTGAGAGAATCTCCGCCAAGGCAGCACTTGATCATCCCTATTTTGACAGCCTTGACAAGTCTCAATTTTAA	1059	0.5052	MFVNYHLIGTLECIAWLICCSLCKWKGLKEGIVLTSFLFWDPMEKYEKLEKVGEGTYGKVYKAMEKATGQLVALKKTRLEMDEEGVPPSALREVSLLQMLSHSLYVVRLLCVEHVHKTPKASSLPSKPLLYLVFEYLDTDLKKFIDSHRKVPNPTPLPPSLIQNFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQHKGVLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKEWPSVTSLRDWHVYPQWEPQNLARAVPSLGPDGVDLLSKMLKYNPAERISAKAALDHPYFDSLDKSQF	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g2087	352	ProSiteProfiles	Protein kinase domain profile.	46	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g2087	352	ProSitePatterns	Protein kinases ATP-binding region signature.	52	75	IPR017441	GO:0005524
	Glsi06g2087	352	PANTHER	CELL DIVISION PROTEIN KINASE	43	344	-	-
	Glsi06g2087	352	SMART	serkin_6	46	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g2087	352	Coils	Coil	64	84	-	-
	Glsi06g2087	352	FunFam	Cyclin-dependent kinase B2,2	42	138	-	-
	Glsi06g2087	352	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	181	193	IPR008271	GO:0004672\|GO:0006468
	Glsi06g2087	352	FunFam	Cyclin-dependent kinase 2	140	351	-	-
	Glsi06g2087	352	Gene3D	Transferase(Phosphotransferase) domain 1	140	351	-	-
	Glsi06g2087	352	Gene3D	Phosphorylase Kinase; domain 1	32	138	-	-
	Glsi06g2087	352	Pfam	Protein kinase domain	46	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g2087	352	SUPERFAMILY	Protein kinase-like (PK-like)	38	347	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g2087	Glsi-ChrGlsi06	67983322	67986256	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g2087	43	352	Core Cell Cycle Gene Families	AT3G54180	86.129	0.0	551

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-Pl	Glsi06g2087		Pkinase	1.8e-66	CL0016