Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g2075 ATGATTTACACATCACAAAGAAACGAGGTCCACTCCCCACATGCTCACAGCCCCCCAAATGCGCATGGTGTTGCGCATGTGAACCTCTTTTCTCAACTCTTTATCAATCCGAAAAATGTCACTTCTCATTGTCATCGCTTTACTTTTCAATCTTTCTTGCTTCAACCCCGGTTTAGGGCATTCCCGCGTATGGAAGCGTCTCCTTCCAACTCCGACATCTTCACAGCTCCTCCGGCAACTTCCAATTCACCGAGATACGGTATTCTATCTGCTTCCAATATTACTCAGGCACCTTTATCGTTCTTGTTGGAGTATCTGGGGATTCTGCGAAGCAGGTCCAATCACCAAGAAACTGACCCCTTTATTAACTACCGACTCTCTTCTGGATTCCGTAATCCTCTCCATAGTCGCCTTGAGCAGCCTTCCGCAATCCCTAATGATGGGGAGGTCTCCATTAGCATTATTGGGGCTGGGGAACAACACCGTGATAGGGAAGGGACTGGTTTGGTGGTTGGCCAGCTGAGGGAAGTCCTTTCCCAAAATGAAGTATCGGTATCAGCTCAACCCATGGCTGGGATGCCCTCCACAACGCTCCCTCCTTCTTCGGACATTCAGGAACATTCAAGGACTGAGCGTGTTGCAGGAGAGGGCGTTTCCCAATCTGTGAATGCAACTTCCGATGCAGCGGCTGGTGATGGAGTTGGTGCTAATGCTAGGGATTCTTCCTACCAGAGATACGATATTCAGCAGGCTGCCCGCTGGATTGAGCAGGTCTTGCCCTTCACTTTACTATTGTTGGTCGTCTTCATTCGGCAGCATTTGCAAGGTTTTTTTGTGACAATATGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTCTGCGGAAGCAGACAGCTCTGAAGGGAGAGAGGAAAGTCCCTGTTCTGATTGGTATTGCTATTGCATTTACGCTGCACGTGGTTGGTGTTTATTGGTGGTATCAGAATAACGATATGTTATATCCATTGGTCATGCTTCCTCCAAAAGCTATACCTCCTTTCTGGCATGCTATTTTCATAATCATGCTGAATGATGCTTTGGTCCGCCAGGCTGGGATGGTATTCAAGTGCATTTTGTTGATGTATTACAAGAGCAGCAGAGGCCGAAATTATCGTAATCAGGGAAAAATGCTGACTATAGTTGAGTACCTACTTCTTCTTTACCGTGCCTTGTTGCCAACACCAGTATGGTATCGATTCTTCTTGAACAAAGAATATGGAAGCCTCTTTTCATCATTGCTGACAGGATTATATCTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTACTGCAGTGAAGGCATTGTCATGTAAAGATGTGCACTATGGTGCTTATGCAACATCAGAGCAGGTCAATGCAGTTGGTGATCTTTGTACTATTTGCCAGGAAAAGATGCATGCCCCAATCTTACTACGTTGTAAACACATCTTCTGCGAAGAATGTGTATCAGAATGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTTAAACCTGCAGATCTTAGATCATTTGGAGATGGCTCTACTAGTCTGTTTTTCCAGTTATTCTAA 1614 0.4542 MIYTSQRNEVHSPHAHSPPNAHGVAHVNLFSQLFINPKNVTSHCHRFTFQSFLLQPRFRAFPRMEASPSNSDIFTAPPATSNSPRYGILSASNITQAPLSFLLEYLGILRSRSNHQETDPFINYRLSSGFRNPLHSRLEQPSAIPNDGEVSISIIGAGEQHRDREGTGLVVGQLREVLSQNEVSVSAQPMAGMPSTTLPPSSDIQEHSRTERVAGEGVSQSVNATSDAAAGDGVGANARDSSYQRYDIQQAARWIEQVLPFTLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKVPVLIGIAIAFTLHVVGVYWWYQNNDMLYPLVMLPPKAIPPFWHAIFIIMLNDALVRQAGMVFKCILLMYYKSSRGRNYRNQGKMLTIVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFTAVKALSCKDVHYGAYATSEQVNAVGDLCTICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g2075 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 531 IPR013083 -
Glsi06g2075 537 ProSiteProfiles Zinc finger RING-type profile. 476 514 IPR001841 -
Glsi06g2075 537 SUPERFAMILY RING/U-box 468 519 - -
Glsi06g2075 537 MobiDBLite consensus disorder prediction 188 204 - -
Glsi06g2075 537 SMART ring_2 476 513 IPR001841 -
Glsi06g2075 537 ProSitePatterns Zinc finger RING-type signature. 491 500 IPR017907 -
Glsi06g2075 537 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 73 537 IPR044235 GO:0061630|GO:1904294
Glsi06g2075 537 Pfam Zinc finger, C3HC4 type (RING finger) 474 517 - -
Glsi06g2075 537 MobiDBLite consensus disorder prediction 188 233 - -
Glsi06g2075 537 CDD RING-HC_RNFT1-like 474 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g2075 Glsi-ChrGlsi06 67937722 67944029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g2075 64 537 C3H Transcription Factor Family AT5G01960 65.053 0.0 609