Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g2060 ATGGCTTCCCTCCTTCGTCCAACTACTACTACACTTCAACATAATCGAATAAAAATCTGCTTCTCTCCTCTGAAACCCACTACCCCAAATAATCTTTGTTTCTTAACAAACCGTTTCAAGAGTAACCCTGCAAAGTGTAAAGCTTTTTTTGAGGACATTCCCAAAGATTTGTTGGGGAATACTATATATCTGGACCAGTTTCCTGTTCTACGATCAGGATTCGTCCAATTTCAGAGAGTAACCGAAGACTTAACGGACATGCAGAAATGGGGCTTCCTACTTTTTGCTGGACTGACATGGATTTATTTGACTGCAAGGCCAGGTGTTCTAATTGGCGCCATTGATGCCTACCTTCTGGCTCCTCTGCAACTGGGTTTGGACAATTTAACAGGAAGAAGGAATCTGAAGAGGGCTGATTTTATAGTTGGAGATAAGCTAGGAGAAGGGTCATTTGGGGTTGTTTATTCGGGTGTTATGGCTCCCAAGAATGTAGATGTAGAAGAGAGGGTGCCGAAGAGGGGAAGAGGCAAGGCAGCAAATTTGGATGTGAAATCTAAGGATAAAGTTATTCTTAAAAAGGTGAAGGTTGGAGTCCAAGGGGCTGAAAATTTTGGCGATTTTGAGGAGTGGTTCAATTACAGGCTTTCCAGAGCAGCTCCTGAAACCTGTGCTGATTTCCTTGGAAGTTTTATAGCTGATAAAACAAATTCACAGTTCATAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCGCACTCTTGCTGATTACATGAAAGATCGTAACTTTCCTTCAAACTTAGAGTCTGTCATGTTTGGAAGTGTCTTGCAAGGTGCAGACTCTTTTAAGCGGAATGCATTGATCATCAAGCAAATAATGCGCCAGATTATTACATCTCTTAAGAAAATACACAACACAGGCATTGTTCACAGAGATGTAAAGCCATCCAATTTAGTAGTCACTAAACGGGGGCAGATTAAACTCATAGATTTTGGTGCAGCAACAGACCTTCGGATTGGAAAGAATTATGTGCCCAACAGTACTCTTCTGGACCCTGACTACTGTCCCCCAGAATTATTTGTACTGCCAGAAGAAACACCAAGTCCTCCCCCAGAGCCAATTGCAGCTTTGCTTTCACCAATCTTGTGGCAGTTGAACAGTCCTGATCTGTTTGACACGTATTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCATCCTTAAGCAACAAAGCTTGTCTGTGA 1251 0.4229 MASLLRPTTTTLQHNRIKICFSPLKPTTPNNLCFLTNRFKSNPAKCKAFFEDIPKDLLGNTIYLDQFPVLRSGFVQFQRVTEDLTDMQKWGFLLFAGLTWIYLTARPGVLIGAIDAYLLAPLQLGLDNLTGRRNLKRADFIVGDKLGEGSFGVVYSGVMAPKNVDVEERVPKRGRGKAANLDVKSKDKVILKKVKVGVQGAENFGDFEEWFNYRLSRAAPETCADFLGSFIADKTNSQFIKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGSVLQGADSFKRNALIIKQIMRQIITSLKKIHNTGIVHRDVKPSNLVVTKRGQIKLIDFGAATDLRIGKNYVPNSTLLDPDYCPPELFVLPEETPSPPPEPIAALLSPILWQLNSPDLFDTYSAGIVLLQMAIPSLSNKACL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g2060 416 SUPERFAMILY Protein kinase-like (PK-like) 137 406 IPR011009 -
Glsi06g2060 416 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 46 414 - -
Glsi06g2060 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Glsi06g2060 416 Pfam Protein kinase domain 290 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2060 416 Gene3D Phosphorylase Kinase; domain 1 127 250 - -
Glsi06g2060 416 ProSiteProfiles Protein kinase domain profile. 140 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2060 416 Gene3D Transferase(Phosphotransferase) domain 1 277 414 - -
Glsi06g2060 416 SMART serkin_6 140 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g2060 Glsi-ChrGlsi06 67822115 67824906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g2060 140 339 MAP Kinase Kinase Kinase AT3G13530 24.631 3.00e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Glsi06g2060 Pkinase 8.3e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g2060 06 67822115 67824906 Glsi06g2060 06 67822115 67824906 ECH