Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g2059 ATGGTTTCCTCTCAGTTTTCTGGTTTGACTAAGAATGGCACATGCAAACCTTTCCAGACCCAGATGTTCTTTCCTGCAAGCCTCACTGACACCGTCATTACAGATCATGTTGAGCTTGATTTCTCTGATGTCTTTGGTCCTGTTACAGTTCCTTCCTCAGTAGAAGTGAATAATGTTGATTCTGCTAGTGCTGAGCCCATAGAAGAATTGAGTGAACTCATTTATGATGATCCAGCTGTCATTTACACCCGCTCGCATTCTCTTGTTGGCCCTTCTACTTGTGTTAGTCAGTCACTGAAGCTTGGAAAACTTACCATACATGAGACTGAGGATTCATTGGAACTAGTAGAGCATGTTGCTGGAGAGACTATTAAAGAAGTTGAAGAATCTTACATTGACAATGTCATCATTGAGGAATCTTTTAAAGATGATAATGGCCATCTCATGAAGATCCAGAGAGTAAGCATTGAAGATTTTGAGATTTTGAAAGTTGTGGGGCAGGGAGCATTTGCAAAAGTATACCAAGTGAGGAAAAAGGGTACTTCAGAAATATATGCAATGAAGGTTATGCGGAAGGATAAAATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGAGGAATATTTTAACCAAAATAGAGCACCCCTTTGTTGTCCAACTCAGATACTCTTTTCAGACAAAATACCGGTTGTATCTTGTGCTGGATTTTGTAAATGGGGGCCATCTCTTCTTTCAGCTTTATCACCATGGCCTTTTCAGAGAGGATCTGGCACGCATATATGCTGCTGAGATTGTTTCTGCAGTTTCCCATCTCCATGCAAATGGAATAATGCACAGGGATCTAAAACCTGAAAATATTCTCCTGGATGCTGATGGCCACGTTATGCTGACGGATTTTGGCTTGGCCAAGCAATTTGAAAATAATACAAGGTCTAATTCCATGTGTGGGACAATAGAGTACATGGCACCTGAAATTATTCTTGGCAAGGGCCATGATAAGGCAGCTGACTGGTGGAGTGTCGGAATATTGCTGTTTGAAATGCTTACTGGGAAGCCTCCCTTCTGTGGTGGTAACCGTGAGAAGATCCAGCAGAAAATAGTTAAAGACAAGATAAAGCTGCCAGCATTTTTGTCTAGTGAAGCACATTCTCTGTTGAAAGGGCTGCTGCAGAAGGATGCAATTAAACGCTTTGGTTGTGGACCTTGCGGTAGCCAGGAAATTAAAGGCCACAAGTGGTTTAAGCCGATCAATTGGAAGAAGTTGGATGCGCGAGAAATCCAACCAAGCTTTCGTCCAGAAGTTGCTGGGAAGCACTGTGTTGCCAACTTTGAGAAGCGCTGGACTGATATGCCTGTTGTGGACTCACCAGCTGCGAGCCCAAGTGGTGGAAATCCTTTCAAGGACTTTAGTTATGTGAGGCCTGCAGCCTCTTTCCTTCAGCGGAATAGCCCTGCATATTAG 1467 0.4294 MVSSQFSGLTKNGTCKPFQTQMFFPASLTDTVITDHVELDFSDVFGPVTVPSSVEVNNVDSASAEPIEELSELIYDDPAVIYTRSHSLVGPSTCVSQSLKLGKLTIHETEDSLELVEHVAGETIKEVEESYIDNVIIEESFKDDNGHLMKIQRVSIEDFEILKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIMEKNHAEYMKAERNILTKIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHANGIMHRDLKPENILLDADGHVMLTDFGLAKQFENNTRSNSMCGTIEYMAPEIILGKGHDKAADWWSVGILLFEMLTGKPPFCGGNREKIQQKIVKDKIKLPAFLSSEAHSLLKGLLQKDAIKRFGCGPCGSQEIKGHKWFKPINWKKLDAREIQPSFRPEVAGKHCVANFEKRWTDMPVVDSPAASPSGGNPFKDFSYVRPAASFLQRNSPAY 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g2059 488 CDD STKc_AGC 165 415 IPR045270 GO:0004674|GO:0005524
Glsi06g2059 488 SMART pkinase_C_6 416 475 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi06g2059 488 Gene3D Transferase(Phosphotransferase) domain 1 239 434 - -
Glsi06g2059 488 PANTHER RIBOSOMAL PROTEIN S6 KINASE 123 478 - -
Glsi06g2059 488 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi06g2059 488 Pfam Protein kinase domain 159 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2059 488 ProSiteProfiles Protein kinase domain profile. 159 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2059 488 SMART serkin_6 159 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2059 488 Pfam Protein kinase C terminal domain 437 473 IPR017892 GO:0004674|GO:0005524|GO:0006468
Glsi06g2059 488 SUPERFAMILY Protein kinase-like (PK-like) 156 476 IPR011009 -
Glsi06g2059 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Glsi06g2059 488 ProSitePatterns Protein kinases ATP-binding region signature. 165 188 IPR017441 GO:0005524
Glsi06g2059 488 Gene3D Phosphorylase Kinase; domain 1 156 456 - -
Glsi06g2059 488 FunFam Non-specific serine/threonine protein kinase 156 261 - -
Glsi06g2059 488 FunFam Non-specific serine/threonine protein kinase 239 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g2059 Glsi-ChrGlsi06 67817754 67820947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g2059 1 485 AGC Kinase Gene Family AT3G08720 68.916 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Glsi06g2059 Pkinase 5e-75 CL0016