Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g2055 ATGAGTTCTGATCAGCCACTGCTTTCAGAACCAGATATTCCTTTGGTGACTCGTCGCCATTCTCGGAAAACAAGATCTTTTGGCTGCAATGTCTCCTCCTCGTCTTCTTCCATTTATGAGGATGATCGAAGTGGTAACTTTGACGAGAACGACTTAAACATTACATCTTCTGGAGATTCTGGTTTTGGTACCGCACTTGCACATAGCTCTTTTGCAACAGAAAAGGAGTTCCGATCTGCTGAATCCCAGTTTTGCCACCGGTCACCTTTGGCATGCCCCACACCCGAGAGAAGGCGCAGGGTGTCGTGGGGTGCAATGGAACTGCGTGATATAAACAACAATAGTGCTCCTTTTGAAATATCTAGTGCTCCATCGAGAGTGCAGGAAAAGTTGAATAAATCACAGAGAATTCGCAACAAAAGTGTGCAATTTGAAGATAACCCGATAAATGATGACAATCCGAGGCTGATATATATCAATGAACCCAAGAAGACAAATGACAAGTATGAGTTCACGGGGAATGAGATCCGAACCAGTAAATACACAGTTATCACCTTCCTGCCCAAGAATCTTTTCATTCAGTTTCATCGGGTTGCTTATTTGTACTTTCTCGCCATTGCGGCTCTAAATCAGCTCCCTCCGCTGGCTGTCTTTGGTAGAACTGTGTCTCTTTTCCCCCTCTTGTTTGTGCTTTGTGTCACAGCTATCAAGGATGGCTATGAGGATTGGCGGAGGCACAGGTCAGACCGCAATGAAAACAACCGAGAGTCTCTAGTTCTACAATCTGGTGATTTCCAACTAAAGAAATGGAAGAATGTACAAGCTGGTGAGGTTGTTAAGATCTTTGCCGATGAGACTATTCCAGCTGACATGGTATTGTTGGGGACAAGTGATCAAAGTGGGCTTGCCTATATTCAAACAATGAATTTGGATGGAGAATCTAATTTAAAGACAAGGTATGCTCGGCAGGAAACAACTTCAGCAGTATCAGCAGAATGTTGTGTTGTTTCTGGGGTTGTTAGATGTGAGCAACCTAACAGGAATATTTATGAATTCACGGCCAACATGGAGTTCGGTGGGCATAAGTTTCCCCTTAGCCAATCGAACATTGTTCTGCGTGGTTGCCAATTGAAGAACACGGATTGGATAATTGGTGTTGTAGTTTATGCAGGGCAGGAAACAAAAGCAATGTTGAATAGTGCAGCTTCCCCTTCCAAGAGAAGCAGACTGGAAAGTTACATGAACAGAGAAACCCTTTGGTTGTCAGTTTTTCTCCTTATCATGTGTTCAGTTGTGGCCCTTGGGATGGGTCTTTGGCTGGTACGCCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAAGATATTTCACAGAAGGGGAAGATAATGGGAAGGATTACAGATATTATGGGATACCAATGGAAACCTTTTTTTCATTTTTGAGCTCTGTTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATAACCATGGAGTTGGTTCGTTTGGGCCAGTCATATTTCATGATTGAAGACGGGGATATGTATTGTGCTAACTCTGGGTCAAGGTTTCAGTGTAGATCATTGAATATAAATGAAGATTTGGGTCAAATACGCTACATATTTTCAGACAAGACAGGAACACTAACAGAAAACAAGATGGAATTCCGAAGAGCAAGTGTATATGGAAGTAATTATGGGAGTTCCTTGCTTATGACTGATAAGACAATAGCAGCAGTTAGTGGCAAACGGAGATGGAAGCTCAAATCTGAAATTGCTGTTGATTCTGAGCTCATGACACTGTTGCATACGGATTCAAATAGTGATGAAAGGATCGCTGCACATGAATTTTTCCTTACGTTGGCTGCTTGTAATACTGTGATCCCTATCCTTGGTCATGGTAGATTTTCTAGTTCTGGAGTAAGTGAATCAAATGAGGACATAGAAGGTATTGATTATCAGGGAGAATCTCCTGATGAACAAGCTTTAGTTGCTGCAGCCTCTGCATATGGATATACACTTTTTGAGCGGACATCTGGACATATTGTTATTGATGTCAATGGTGAAAAGCTCAGGTTGGACGTATTGGGTCTGCACGAGTTTGATAGTGTTCGAAAAAGGATGTCTGTTGTTATTCGATTTCCTGACAATGTTGTAAAGGTGTTAGTTAAAGGTGCTGATACTTCGATGTTTAGTATCCTAGCAGATGGCAGTGAGACTAATGATAGTGTACGGCATGCAACTCAGGGCCATTTGATTGAATATTCTTTGCAAGGTTTGCGCACCCTTGTAGTTGCTTCCAGGAATCTTTTAGATCCAGAACTTGAGCAGTGGCAGAGCATGTATGAAGAAGCAAGCACTTCATTGACTGAGAGAGGTGCAAAACTACGTCAAACAGCAGCTCTTATAGAATGCAACTTAAAACTACTTGGAGCAACTGCGATTGAGGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCCTTGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACAGCAATTTCAATTGGTCTCTCCTGCAAACTTTTGACTGCAGATATGCAGCAGATTGTTATAAATGGAACATCAGAGATTGAATGTAGAAATCTTTTGGCTGATGCTAAAGCCAAGTATGCTGTGAGATCTTCAGGTAGAAGATACCAGAATCTGAGGCACAAAACCAATGATGGACACGGTGATATTGAGATTCCCAATAATACGAAGTCATTGAGTATGCCCAAATGCAATACACTAAATGAAGAAGGAACTACTGCTCCATTGGCACTCATAATTGATGGAAACAGTTTGCTTTTCGACCTTGCAACTTCTTGTAGGGTTGTCCTATGCTGTCGTGTTGCACCGCTGCAGAAAGCAGGAATTGTTGATCTGATAAAGAGTCGCACTGATGATATGACACTGGCTATAGGTGATGGTGCCAATGATGTGTCGATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGGACAGTTTCAGTTCTTGAAAAGACTGCTGCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGCTATTTAGTTCTCTACAATTTCTACCGCAATGCTGTCTTTGTATTGATGCTATTCTGGTATATATTATGCACTGCTTTTTCTACAACTTCTGCATTGACAGACTGGAGTAGTGTGTTCTATTCTGTGATATACACTTCTGTCCCGACTATCGTTGTTGGTATTCTGGACAAAGGCTTGAGTCATAAGACACTCCTGCAGTATCCAAAACTGTATTGTGCAGGTCACCGGCATGAGGCTTACAATTTGCAATTATTTTGGATCACAATGATTGACACACTCTGGCAGAGCCTTGTTCTCTTCTACATACCCTTGTTCACCTATAAGGATAGCACAATTGATATATGGAGCATGGGCAGTCTGTGGACAATCGCAGTTGTTGTCCTTGTAAATGTACATTTGGCTATGGACATTAAGCATTGGGTATTAATTACTCATGCTGCTGTATGGGGATCAATAATTATTACATTTGGTTGCATGGTGGTATTGGATTCTATACCTGTCTTTCCCAATTACTGGACTTTTTATCATCTGGCTAAGTCCCCTACATATTGGATCACTATTTTGCTTATAACAGCTGTGGCATTGCTCCCTCGGTTTATTTGTAAAGTCGTTTATCAAGTCTTTTGGCCTTCAGATATCCAGATTGCTAGAGAAGCTGAGATAATGAGAAAACGGCGTAATCATCTGGGGCCAAGGTCACCTGGTGAGTTGCTGAAGCAGATTGCAGTGATGAGAAACAAATGCTAG 3873 0.4209 MSSDQPLLSEPDIPLVTRRHSRKTRSFGCNVSSSSSSIYEDDRSGNFDENDLNITSSGDSGFGTALAHSSFATEKEFRSAESQFCHRSPLACPTPERRRRVSWGAMELRDINNNSAPFEISSAPSRVQEKLNKSQRIRNKSVQFEDNPINDDNPRLIYINEPKKTNDKYEFTGNEIRTSKYTVITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQSGDFQLKKWKNVQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYARQETTSAVSAECCVVSGVVRCEQPNRNIYEFTANMEFGGHKFPLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLESYMNRETLWLSVFLLIMCSVVALGMGLWLVRHKNQLDTLPYYRKRYFTEGEDNGKDYRYYGIPMETFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDGDMYCANSGSRFQCRSLNINEDLGQIRYIFSDKTGTLTENKMEFRRASVYGSNYGSSLLMTDKTIAAVSGKRRWKLKSEIAVDSELMTLLHTDSNSDERIAAHEFFLTLAACNTVIPILGHGRFSSSGVSESNEDIEGIDYQGESPDEQALVAAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADTSMFSILADGSETNDSVRHATQGHLIEYSLQGLRTLVVASRNLLDPELEQWQSMYEEASTSLTERGAKLRQTAALIECNLKLLGATAIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLTADMQQIVINGTSEIECRNLLADAKAKYAVRSSGRRYQNLRHKTNDGHGDIEIPNNTKSLSMPKCNTLNEEGTTAPLALIIDGNSLLFDLATSCRVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKRLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSVPTIVVGILDKGLSHKTLLQYPKLYCAGHRHEAYNLQLFWITMIDTLWQSLVLFYIPLFTYKDSTIDIWSMGSLWTIAVVVLVNVHLAMDIKHWVLITHAAVWGSIIITFGCMVVLDSIPVFPNYWTFYHLAKSPTYWITILLITAVALLPRFICKVVYQVFWPSDIQIAREAEIMRKRRNHLGPRSPGELLKQIAVMRNKC 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g2055 1290 SFLD p-type atpase 528 1036 IPR044492 -
Glsi06g2055 1290 Gene3D - 654 798 IPR023299 GO:0000166
Glsi06g2055 1290 Gene3D - 230 400 - -
Glsi06g2055 1290 NCBIfam HAD-IC family P-type ATPase 805 860 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g2055 1290 NCBIfam HAD-IC family P-type ATPase 955 1071 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g2055 1290 NCBIfam HAD-IC family P-type ATPase 477 567 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g2055 1290 NCBIfam phospholipid-translocating P-type ATPase 171 1260 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Glsi06g2055 1290 FunFam Phospholipid-transporting ATPase IC 541 553 - -
Glsi06g2055 1290 SUPERFAMILY Calcium ATPase, transmembrane domain M 171 1252 IPR023298 -
Glsi06g2055 1290 Pfam Phospholipid-translocating P-type ATPase C-terminal 1013 1253 IPR032630 -
Glsi06g2055 1290 FunFam Phospholipid-transporting ATPase 655 799 - -
Glsi06g2055 1290 Pfam E1-E2 ATPase 255 502 - -
Glsi06g2055 1290 Pfam Cation transport ATPase (P-type) 646 733 - -
Glsi06g2055 1290 SFLD Haloacid Dehalogenase 528 1036 - -
Glsi06g2055 1290 SUPERFAMILY Calcium ATPase, transduction domain A 254 396 IPR008250 -
Glsi06g2055 1290 CDD P-type_ATPase_APLT_Dnf-like 173 1145 - -
Glsi06g2055 1290 SUPERFAMILY HAD-like 531 1030 IPR036412 -
Glsi06g2055 1290 Gene3D - 809 1025 IPR023214 -
Glsi06g2055 1290 MobiDBLite consensus disorder prediction 1 45 - -
Glsi06g2055 1290 MobiDBLite consensus disorder prediction 26 41 - -
Glsi06g2055 1290 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 550 825 IPR023299 GO:0000166
Glsi06g2055 1290 ProSitePatterns E1-E2 ATPases phosphorylation site. 546 552 IPR018303 -
Glsi06g2055 1290 FunFam Phospholipid-transporting ATPase 812 1025 - -
Glsi06g2055 1290 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 135 1263 - -
Glsi06g2055 1290 Pfam Phospholipid-translocating ATPase N-terminal 157 222 IPR032631 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g2055 Glsi-ChrGlsi06 67793675 67803806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g2055 134 1262 Primary Pumps ATPases AT5G04930 56.804 0.0 1295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g2055 06 67793675 67803806 Glsi06g2055 06 67793675 67803806 ECH