Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g2048 ATGCAATTCAGCCACTTCCTGTTTCTTCTTTTTGCTCCAGTGCTGGTAATCTCGATCGACCCAGTTTTCAATGACGATGTGTTGGGGTTGATCGTCTTTAAAGCTGGTCTACGAGACCCGAAAGCTAAACTCTCTATGTGGAATGAAGATGATGACACTCCCTGCAACTGGGTCGGGGTCAAATGTGATCCTACAACCAATCGGGTCTCTGCCCTTGTCCTAGACGGATTTTCTCTTTCCGGGCATATTGATAAAGGACTCTTGAGATTGCAATTCCTTCAAATTCTATCACTTTCCAGGAATAACTTCACAGGGACTATAAACCCTGATCTTCCTCGCCTTGGAAGTTTACAACTTGTTGACTTGAGCGAGAACAATCTCTCCGGGTCAATCCCAGAAGAATTTTTCCAGCAATGCGGGTCTTTAAGGGAAGTTTCATTTGCCAGAAACAACCTTACAGGTAAAATTCCTGATTCTTTGAGCTTCTGCTCCACTTTGGCAACTGTTAACTTCTCCTCTAATCAGCTATTTGGAGAATTACCATCTGGGATATGGTTTTCGAGGGGATTACAATCACTTGATCTGTCAAATAACTTGCTAGAGGGAGAGATTCCTGAAGGAATTCAGAATCTTTATGATTTAAGGGAGTTAAGTCTACAGAAGAACCGGTTCATTGGCCAGCTTCCTGGAGATATTGGAGGCTGCTTGCTTTTGAAATCACTTGATTTCAGTGATAATTTTCTCTCTGGGAGACTTCCTGAGTCAATACAAAGACTCAGCTCATGCACATCTCTCAGTTTACAGGGCAATTCATTTACAGGAGGCATTCCTGATTGGATTGGAGAATTAAGAAATCTAGAAATATTAGACCTTTCTGCAAATAGATTATCGGGTTGGATTCCTAAATCAGTTGGAAATCTTGATTCACTGAGTAAATTAAACTTATCAAGGAATCAACTTACAGGAAACTTGCCAGAGTCCATGGTAAACTGCATTAAGCTCTTGGCTCTCGACATCAGCCACAATCACTTATCAGGTCATCTTCCTTCATGGATTTTTAAGATGGGTTTACAAAGTATCTCACTTTCAGGGAACAGCTTCACTAGGAGCAATAATCCCTCACTTACATCTACACCTGCATCTTTTCATGGCCTCGAGGTTTTGGACTTGTCATCAAATGCATTTTCGGGCTATCTTCCATCTAGCATTGGGGGTCTTAGTAGCTTGCAAGTCTTGAATATGTCCACTAATAATATCACCGGTTCTATTCCAGTGAGTATAGGAGAACTTAAATCTTTGTACATTCTTGACTTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGGTTGATTTCGCTCAGCGAACTGAGACTCCAAAAGAACTTCGTAAGTGACAGAATTCCAGCCCAAATTGAGAAGTGTTCATCTCTGACAACTTTGATTCTTTCTCACAACAAACTTACTGGTTCAATCCCTTCAGCCATTGCAAACCTAACCAAACTTCAATACATAGATTTGTCATGGAATGAACTCTCTGGAAGTTTACCCAAGGAGCTGACAAATCTTTCCCACCTCTTATCCTTTAATGTCTCCTACAACCACTTTCATGGTGAGCTACCCGTGGGTGGCTTCTTCAATACTATCCCCCCCTCATCTGTCTCTGCAAATCCATTGTTATGTGGTTCCATTGTCAATCACTCCTGCCCATCTGTCCATCCGAAACCAATTGTCCTTAACCCCAATTCTTCTGATTCTAATTCTAGCTCTTCATCTCAAAATAATCATCATAACAAGGTCATTCTCAGTATCTCTGCCCTCATTGCTATTGGGGCTGCTGCTTTTATTGCCATTGGTGTGATGGCTGTTACTGTCCTAAATGTCCGAGTACGTTATTCAATGTCACATTCTGCTGCTCCATTTGCATTCTCTGGTGGTGAAGACTATAGTTGTTCGACCCCAAATGATCCAAACTATGGCAAACTTGTAATGTTTACTGGTGATGCTGAATTTGCTGATGGGGCCCATAATCTTCTCAACAAAGACAATGAAATTGGTCGTGGTGGATTTGGAGTTGTTTATCACACTTTCCTTCGAGATGGGCATTCTGTTGCAATCAAGAAGCTTACAGTCTCCAGTTTGATCAAGTCCCAAGAAGACTTTGAGAGGGAAGTGAAGAAGCTTGGGAAGACGAGGCACCAGAACCTTGTGGCACTTGAAGGTTATTACTGGACTTCATCCTTGCAGCTCCTTATTTATGAGTACCTATCCAGAGGGAGTTTGCATAAGCTTCTACATGATGAAAACAGCAGGGAGGTCCTTTCTTGGAGACAAAGGTTCAAGATTATTCTTGGCATGGCAAAAGGCTTGTCCCATTTGCACCAAATGAACATTATTCACTATAATCTAAAATCAACAAATGTTCTGATTGACTGCTCCGGGGAGCCAAAAATAGGAGATTTTGGGTTGGTGAGGCTATTGCCAATGCTAGACCATTGTGTCTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCTGAGTTTGCCTGCCGCACGGTGAAAATAACTGAGAAATGTGATATATATGGTTTTGGGATCCTAGTTCTGGAAGTAGTGACAGGAAAAAGACCAGTGGAATATATGGAGGATGATGTGGTTGTTCTGTGTGACATGGTAAGGGGTGCATTGGAGGAAGGCAAGGTGGAGCAATGTGTTGATGCGAGACTCCTGGGTAATTTTGCTGCTGAGGAAGCAGTTCCTGTGATAAAGTTGGGGTTAATTTGTGCATCACAAGTGCCATCAAACCGTCCAGACATGGCTGAGGTTGTCAACATATTAGAGTTGGTCCAGTGCCCTTCAGAAGGACAAGAGGAATTAGAATGA 2898 0.4213 MQFSHFLFLLFAPVLVISIDPVFNDDVLGLIVFKAGLRDPKAKLSMWNEDDDTPCNWVGVKCDPTTNRVSALVLDGFSLSGHIDKGLLRLQFLQILSLSRNNFTGTINPDLPRLGSLQLVDLSENNLSGSIPEEFFQQCGSLREVSFARNNLTGKIPDSLSFCSTLATVNFSSNQLFGELPSGIWFSRGLQSLDLSNNLLEGEIPEGIQNLYDLRELSLQKNRFIGQLPGDIGGCLLLKSLDFSDNFLSGRLPESIQRLSSCTSLSLQGNSFTGGIPDWIGELRNLEILDLSANRLSGWIPKSVGNLDSLSKLNLSRNQLTGNLPESMVNCIKLLALDISHNHLSGHLPSWIFKMGLQSISLSGNSFTRSNNPSLTSTPASFHGLEVLDLSSNAFSGYLPSSIGGLSSLQVLNMSTNNITGSIPVSIGELKSLYILDLSDNKLNGSIPSEIEGLISLSELRLQKNFVSDRIPAQIEKCSSLTTLILSHNKLTGSIPSAIANLTKLQYIDLSWNELSGSLPKELTNLSHLLSFNVSYNHFHGELPVGGFFNTIPPSSVSANPLLCGSIVNHSCPSVHPKPIVLNPNSSDSNSSSSSQNNHHNKVILSISALIAIGAAAFIAIGVMAVTVLNVRVRYSMSHSAAPFAFSGGEDYSCSTPNDPNYGKLVMFTGDAEFADGAHNLLNKDNEIGRGGFGVVYHTFLRDGHSVAIKKLTVSSLIKSQEDFEREVKKLGKTRHQNLVALEGYYWTSSLQLLIYEYLSRGSLHKLLHDENSREVLSWRQRFKIILGMAKGLSHLHQMNIIHYNLKSTNVLIDCSGEPKIGDFGLVRLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDARLLGNFAAEEAVPVIKLGLICASQVPSNRPDMAEVVNILELVQCPSEGQEELE 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g2048 965 SUPERFAMILY L domain-like 51 302 - -
Glsi06g2048 965 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Glsi06g2048 965 SMART LRR_sd22_2 283 309 - -
Glsi06g2048 965 SMART LRR_sd22_2 502 528 - -
Glsi06g2048 965 SMART LRR_sd22_2 430 456 - -
Glsi06g2048 965 SMART LRR_sd22_2 187 210 - -
Glsi06g2048 965 SMART LRR_sd22_2 382 408 - -
Glsi06g2048 965 Gene3D Transferase(Phosphotransferase) domain 1 759 963 - -
Glsi06g2048 965 Gene3D Ribonuclease Inhibitor 23 302 IPR032675 -
Glsi06g2048 965 ProSiteProfiles Protein kinase domain profile. 682 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2048 965 Gene3D Phosphorylase Kinase; domain 1 668 758 - -
Glsi06g2048 965 PRINTS Leucine-rich repeat signature 190 203 - -
Glsi06g2048 965 PRINTS Leucine-rich repeat signature 283 296 - -
Glsi06g2048 965 SUPERFAMILY RNI-like 252 555 - -
Glsi06g2048 965 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Glsi06g2048 965 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 676 758 - -
Glsi06g2048 965 CDD STKc_IRAK 688 952 - -
Glsi06g2048 965 Pfam Leucine rich repeat 284 344 IPR001611 GO:0005515
Glsi06g2048 965 Pfam Leucine rich repeat 480 539 IPR001611 GO:0005515
Glsi06g2048 965 SUPERFAMILY Protein kinase-like (PK-like) 682 955 IPR011009 -
Glsi06g2048 965 Pfam Leucine Rich Repeat 238 259 IPR001611 GO:0005515
Glsi06g2048 965 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515
Glsi06g2048 965 Gene3D Ribonuclease Inhibitor 303 578 IPR032675 -
Glsi06g2048 965 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 24 302 - -
Glsi06g2048 965 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 303 576 - -
Glsi06g2048 965 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 759 960 - -
Glsi06g2048 965 SMART LRR_typ_2 283 306 IPR003591 -
Glsi06g2048 965 SMART LRR_typ_2 382 405 IPR003591 -
Glsi06g2048 965 SMART LRR_typ_2 211 235 IPR003591 -
Glsi06g2048 965 SMART LRR_typ_2 478 501 IPR003591 -
Glsi06g2048 965 SMART LRR_typ_2 188 210 IPR003591 -
Glsi06g2048 965 SMART LRR_typ_2 307 331 IPR003591 -
Glsi06g2048 965 SMART LRR_typ_2 114 138 IPR003591 -
Glsi06g2048 965 SMART LRR_typ_2 430 454 IPR003591 -
Glsi06g2048 965 SMART LRR_typ_2 502 525 IPR003591 -
Glsi06g2048 965 SMART LRR_typ_2 406 428 IPR003591 -
Glsi06g2048 965 SMART LRR_typ_2 526 550 IPR003591 -
Glsi06g2048 965 Pfam Protein kinase domain 683 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2048 965 PANTHER OS05G0588300 PROTEIN 255 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g2048 Glsi-ChrGlsi06 67750280 67753342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g2048 7 962 Receptor kinase-like Gene Family AT5G01890 62.370 0.0 1140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Glsi06g2048 Pkinase 1.1e-41 CL0016