Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g2043 ATGGAACTTGAAGAATTGAGTTTGAAAATGGCGTCAAGGACTTGCATGAACCCGGTATGCGCCACCTCGACGTCGATTCAATGGCGAAAAGGTTGGGCCATGCGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGTTCTGCTTATGAGCAATCAACATTTTGCTATGATTTCCACTCAAAGGATTCTGGTTGGAGGGAGTGCACATCATGTGGCAAGCGTCTTCATTGTGGATGCATTGCTTCTCGGTATCTGCTTGAGTTGCTAGACACTGGTGGTGTAAGCTGTATAAACTGTGCAAGGAATTCCGGACTTCAACCTGTTTCAAGTATTGAAAAGGCTGATGGACCTAGTACATCAAAAGTTGAAAATGGCAGTGACCTTCTATCCACATTTGTGGCCAACCAATTAAAAGGAAGCAATGCTGAGAAAGTGAAGAGTGTGCAAACAGGGGATTATGCAGAGAATGATGGGCTTAGATGTTGGCTTCAACCTCATAATGGTGGTACAAATGGGCCTACTATTCAATTGAAACAAGAAGTTTTGCCTTCTATTGGAGAACTTGGAAGCACTTCTATATCACAAATTCGTCAGGAATCTAATGGATCATCTAAGGCTGCCAAAGTAGACAACTGCAAGGCAGACATGGAAATAAGAGATATGTATGAATCATTGGCTCAAACAAGTTTGAGTATGACTTTGGGTGCTCCTTTGGGAAATTCAAATTCCTTTCGTAGTGATGTTTTTGATGAAAGGGAACATAGTAAGACATCATCTTCAATATTACCAGGCCCCAAATCTCGACATCTCTTACCTAAGCCTCCTAGGTCAACCCTTACTGCAGGCTTGGAGGTAAATGCAGGCATGGTGTCTCAAATTCGTGTTGCAAGGCCACCTGCTGAAGGACGGGGAAGGAATCAGTTACTTCCCCGTTATTGGCCTAGGATTACAGATCAAGAACTACAACAAATCTCTGGAGATTCAAATTCCACCATTGTGCCACTGTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTTCCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATCTCTCAACCAGAGGGCCTTCCTCTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTTTTTCAGTTTAGATTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAAGGTGTAACACCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATTATGGGGTTCCGAAAGGCTACAAATTATTCTGCAGTGCAGGAATCCCATCCATCTAATATTCCCAATGGCTCTCGTTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTGTATTAAGTGGCTACTCTGGCCTTCTTCAGTCACTAAAGGCAAGTTCAGAGACCCACCTAAATGAGCTGTCTAAAAAGTGGAATGCAACTAGTGGTGACATGAATTGGCATAATATTGAGATGCCTGAAGGAAGGAAAAGAGAAGGATTGCTTTTGCCACCAGTGCTGCTTCCTGAGAAAAAAAGGACTCGGAATATTGGGCCAAAAAGTAAGAGGCTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAGGAGGCCCAGGATTTGCTCCGTCCACCTCCAACAGTTAAGCCAAGCATTGTCATGATTGAGGATCATGTATTTGAGGAATATGAAGAACCTCCTATATTTGGGAAGAGGAGTATATTTGTAGTCCGCTCAACTGGGATACATGAACAATGGACACAGTGTGATAGTTGCTCAAAATGGCGAAAGTTACCTGTTGATGTACTCATTCCCCCCAAGTGGACATGCATGGACAATTCATGGGATCAGAGCAGGTGTTCATGTTCTGCTCCCAATGAATTAACCCCAAGGGAACTGGATAATCTTCTGAGATTGAATAAGGAACATAAGAAACAAAGAATGGCAGCAAGCCATGGGCCGACCCTAGAGCAGCATGAATCTTCAGGACTGGATGCTTTGGCTAATGCTGCAATACTCGGAGATGATGCGGGTGACTCTGGCAGGACACCAGTTGCTACCACTACAAAACACCCTAGGCATAGACCTGGCTGCTCCTGCATTGTCTGTATACAGCCACCAAGTGGAAAGGGCAAACACAAACCTACATGCACTTGCAACGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGTCAATCTGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGCAACTATTTGGGCCTAAGGATGAATCAGAAGTAGACAGTACCTCTAGAAATTTGACTCCAGCTGATGGTTTGGAAAATGAAGCAAGGTTGCCAAATGAGTTGGAGTCAAGAAGTCAAACCGATGTGGTTGAAACTGCCAAGGGACAATTAGACTTGAATTGCCATCCTGATCGAGAAGACATGCAGGCTGGGTCAAACAATGTAAGCATGATGAGTCTTGTTCAAGAAGCAAGTCTCCCTTTGGAAACATACCTGAAGCAAAATGGTCTTACTAGCTTGATATCAGAGCAAGCAAATTCAGCTTCCAATGTGCAGGCACAGACAACTAACGAGAGTGACGGAAGACAGAACGAGGATTGCTGCGCTGCATCTACTGTTCATGAGGATGAAAGCAGTCCTGAACAGAACAGCGGGCAAGATAAAAGCGAAAATAATCCCCTTTCATGA 2769 0.4406 MELEELSLKMASRTCMNPVCATSTSIQWRKGWAMRSGEFADLCDKCGSAYEQSTFCYDFHSKDSGWRECTSCGKRLHCGCIASRYLLELLDTGGVSCINCARNSGLQPVSSIEKADGPSTSKVENGSDLLSTFVANQLKGSNAEKVKSVQTGDYAENDGLRCWLQPHNGGTNGPTIQLKQEVLPSIGELGSTSISQIRQESNGSSKAAKVDNCKADMEIRDMYESLAQTSLSMTLGAPLGNSNSFRSDVFDEREHSKTSSSILPGPKSRHLLPKPPRSTLTAGLEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNYSAVQESHPSNIPNGSRSSETSYSGVYENLPVLSGYSGLLQSLKASSETHLNELSKKWNATSGDMNWHNIEMPEGRKREGLLLPPVLLPEKKRTRNIGPKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHVFEEYEEPPIFGKRSIFVVRSTGIHEQWTQCDSCSKWRKLPVDVLIPPKWTCMDNSWDQSRCSCSAPNELTPRELDNLLRLNKEHKKQRMAASHGPTLEQHESSGLDALANAAILGDDAGDSGRTPVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQLFGPKDESEVDSTSRNLTPADGLENEARLPNELESRSQTDVVETAKGQLDLNCHPDREDMQAGSNNVSMMSLVQEASLPLETYLKQNGLTSLISEQANSASNVQAQTTNESDGRQNEDCCAASTVHEDESSPEQNSGQDKSENNPLS 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g2043 922 SMART B3_2 337 437 IPR003340 GO:0003677
Glsi06g2043 922 MobiDBLite consensus disorder prediction 250 276 - -
Glsi06g2043 922 SUPERFAMILY DNA-binding pseudobarrel domain 334 436 IPR015300 -
Glsi06g2043 922 MobiDBLite consensus disorder prediction 874 893 - -
Glsi06g2043 922 MobiDBLite consensus disorder prediction 758 817 - -
Glsi06g2043 922 MobiDBLite consensus disorder prediction 874 922 - -
Glsi06g2043 922 Gene3D - 605 661 - -
Glsi06g2043 922 Gene3D - 315 441 IPR015300 -
Glsi06g2043 922 CDD B3_DNA 335 436 IPR003340 GO:0003677
Glsi06g2043 922 ProSiteProfiles Zinc finger CW-type profile. 602 652 IPR011124 GO:0008270
Glsi06g2043 922 MobiDBLite consensus disorder prediction 902 922 - -
Glsi06g2043 922 ProSiteProfiles B3 DNA-binding domain profile. 337 438 IPR003340 GO:0003677
Glsi06g2043 922 Pfam CW-type Zinc Finger 607 649 IPR011124 GO:0008270
Glsi06g2043 922 Pfam B3 DNA binding domain 337 436 IPR003340 GO:0003677
Glsi06g2043 922 FunFam B3 domain-containing transcription repressor VAL1 315 442 - -
Glsi06g2043 922 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 876 - -
Glsi06g2043 922 MobiDBLite consensus disorder prediction 776 795 - -
Glsi06g2043 922 MobiDBLite consensus disorder prediction 696 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g2043 Glsi-ChrGlsi06 67715295 67723904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g2043 13 874 B3 DNA Binding Superfamily AT4G32010 51.557 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi06g2043 B3 2.3e-15 CL0405