Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g2042 ATGAGGTGCTTCACTGCATTGAAGAATAAGAAGAAAAAGAGTGAACAGATCATGCATGTAAAACGTGTGAACCATAAAGAGCATGCAGCTACAGTACTTCCAGAACCACAAATGCATACTCGCTCCCTGCAGTCTGCACCTTGTAGTTTCAAGACAAGAGTGAAACCCATTCAACCTTTTAATAAAGTCACTAACAATAGGACACGAGCATATTCTGCTCCATCAACTCTTGATGCAGCAGAACAATATACTTTGGTGTCAGTTGAGTATGAGGAACAAGAAGATTCAAAACACCGAGCTGGATCAGTAAAGAAGCAGCGGTCATCCAGCCCACTACCTTTACCTCTCCCATCTCCTCAGGGTGGTGGTTCATTGAAGGCTACTAGTAGCTTTAAGTCAGTGACAACTAGTGGTCCTCTACAAGCTTCTGGACCTTTGCCACTACCACCTACTGGGTCACTTCGAAACTTCCCATTTGAGGAAATTGCTGCTGCTTGCCACAATTTTTCGTCAGATCGATACATGTCAGAAGGTCTTTCTTCGACCATATATAGAGCTTCCTTTGGTGATGATGCTTCCAGTTCAAAGAATTTTGCAGCTACTGTCACTCGCCTTCACCCATCAACTCAGGTCTTGAAGGAATTCGTAAATGAAGTTAACACTCTTGCATCTTTGCAACATCCAAATCTCTGCAAATTGCTAGGTTATCATGCTCGTGAGGGTTCAGAACCGAGAATGTTGGTTTATGAGAGGCTATATCACGGAAGCTTGGACCGCTTGTTGTATGGGAGATCTGATGGTCCACCTCTTGATTGGAACACAAGAATGAAAATTGCTCTCTGTGCTGCCCAAGGTCTTACATTTTTACATGAAGAAGGGCCTTTCCAGGCAATGTATAACGAGTTTTCAACAGCCAACATACAGATTGACAAGGATTTTAGTGCGAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCTGAAGAAGAGATTCCAAGCTGTTCATCTGGTGTGGGAAACTTATCAGTGGAGACACTGGAAAAACGATTGCTCACTCCGAAGAGCAATGTTTGGAGTTTTGGAATTTTTCTTCTGGAGCTACTTACTGGAAGAAAGAATCTTGACAGTCGTCATCCCAAGGAAGAGAGGAATTTAGTCAAGTGGAGCTGGCCTTTCTTAGCCGACGATTGTCGACTGTCATTGATCATGGATCCTCAACTTAAAGGTCGTTTTCCTTCCAAAGCTGCACGTGCTGTAGCTGATATTGCTCTAAGATGCCTTCAAAAGGAACCATCAGAAAGACCCACTATGAGAACCGTTGTTGAGCATCTCAAAATCATACAAGATATGAAGTACTCTTGTCGGTTTCCTCTGCAAGAGCCAGCAGCAATTGCTGGAAAACAGATGTCAAGATCACCAAGTCTTAATGGCATCATCTGCCCCCAGCCTAGATTGAGTTCCTCTCCATCACCGCCATCAGGACCCCAACCTTCTGGTTCACCTCCAAGATGGTCTGGTGGGCCTATCTTGTTTCCTTCCCGTGCTTGTTCCTCCATGCTCTCTTTGGAGGAGCTTGATCGGCAGTTAAGCCAGAAGTCTTCGTCCTCAGCATCTAGGAGGGGTAGTGTTGAAGGATTTTGA 1641 0.4442 MRCFTALKNKKKKSEQIMHVKRVNHKEHAATVLPEPQMHTRSLQSAPCSFKTRVKPIQPFNKVTNNRTRAYSAPSTLDAAEQYTLVSVEYEEQEDSKHRAGSVKKQRSSSPLPLPLPSPQGGGSLKATSSFKSVTTSGPLQASGPLPLPPTGSLRNFPFEEIAAACHNFSSDRYMSEGLSSTIYRASFGDDASSSKNFAATVTRLHPSTQVLKEFVNEVNTLASLQHPNLCKLLGYHAREGSEPRMLVYERLYHGSLDRLLYGRSDGPPLDWNTRMKIALCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEIPSCSSGVGNLSVETLEKRLLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSWPFLADDCRLSLIMDPQLKGRFPSKAARAVADIALRCLQKEPSERPTMRTVVEHLKIIQDMKYSCRFPLQEPAAIAGKQMSRSPSLNGIICPQPRLSSSPSPPSGPQPSGSPPRWSGGPILFPSRACSSMLSLEELDRQLSQKSSSSASRRGSVEGF 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g2042 546 MobiDBLite consensus disorder prediction 526 546 - -
Glsi06g2042 546 MobiDBLite consensus disorder prediction 485 502 - -
Glsi06g2042 546 MobiDBLite consensus disorder prediction 469 484 - -
Glsi06g2042 546 Pfam Protein tyrosine and serine/threonine kinase 173 444 IPR001245 GO:0004672|GO:0006468
Glsi06g2042 546 PANTHER OS01G0588500 PROTEIN-RELATED 103 448 - -
Glsi06g2042 546 MobiDBLite consensus disorder prediction 90 149 - -
Glsi06g2042 546 MobiDBLite consensus disorder prediction 467 512 - -
Glsi06g2042 546 Gene3D Phosphorylase Kinase; domain 1 149 250 - -
Glsi06g2042 546 MobiDBLite consensus disorder prediction 122 142 - -
Glsi06g2042 546 Gene3D Transferase(Phosphotransferase) domain 1 252 455 - -
Glsi06g2042 546 SUPERFAMILY Protein kinase-like (PK-like) 148 455 IPR011009 -
Glsi06g2042 546 ProSiteProfiles Protein kinase domain profile. 169 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g2042 Glsi-ChrGlsi06 67711018 67713951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g2042 148 448 Receptor kinase-like Gene Family AT4G02010 37.785 2.89e-55 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Glsi06g2042 PK_Tyr_Ser-Thr 1.6e-25 CL0016