Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g2041 ATGCAACCTGGGTTTGGTATGCATCGTCGTCTTCTGGAGACGGAGCTGAGTATGCCGCCGGCGTATGGAAACAAGACCCGTGAATCGTTCATTAGTGATGCGAACTTCGACGCCAATATGGTGATCATATTGGCAGCTTTGCTTTGTGCATTAGTATGCGCTCTTGGGTTGAACTCAATAGTGCGATGTGTTTTGCGTTGTAGCCGAAGATTTTCCACCGAGACCCCAGAACAAACAGCTGCAAGGCTAGCGGCAAAGGGCCTGAAGAAACGCGATTTGAGTCAGATTCCGGTGAAGGTGTACGGACCAGGCTCGAATATTCCGGCAACGGAGTGCACGATTTGCCTCGGGGAGTTCGAGAAAGGAGAAAAGGTGCGAATGCTTCCGAAATGCAATCACGGGTTCCATGTGAAGTGCATAGACACATGGCTCCTGTCACATTCTTCTTGCCCGAATTGTCGCCATTCACTGCTCGAGAAATCCACAAATTCGAATAGAAGGAGTGAAGGAGGTATGGGAGCTCGGGTGCCGGAAGATAGGTCCGGCCAGCAAGGCAACGTGGTTGTGGTCGTCGAGCAGGCAAGTTAA 588 0.5119 MQPGFGMHRRLLETELSMPPAYGNKTRESFISDANFDANMVIILAALLCALVCALGLNSIVRCVLRCSRRFSTETPEQTAARLAAKGLKKRDLSQIPVKVYGPGSNIPATECTICLGEFEKGEKVRMLPKCNHGFHVKCIDTWLLSHSSCPNCRHSLLEKSTNSNRRSEGGMGARVPEDRSGQQGNVVVVVEQAS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g2041 195 MobiDBLite consensus disorder prediction 162 187 - -
Glsi06g2041 195 SUPERFAMILY RING/U-box 95 160 - -
Glsi06g2041 195 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Glsi06g2041 195 Pfam Ring finger domain 111 154 IPR001841 -
Glsi06g2041 195 CDD RING-H2_EL5-like 111 154 - -
Glsi06g2041 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 159 IPR013083 -
Glsi06g2041 195 SMART ring_2 112 153 IPR001841 -
Glsi06g2041 195 PANTHER RING-H2 FINGER PROTEIN ATL78 15 166 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g2041 Glsi-ChrGlsi06 67704732 67705319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g2041 7 158 C3H Transcription Factor Family AT3G10910 60.870 4.18e-60 184