LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g2036	ATGAGTTCCAGCGACAGGAACAGAGGAGAGGAGAAAGAATGCGACGAATCAGTCTTGATAACAACCCCGCAGCTAAATATTGATGAGAATCTTCTGGTTGACCCGAGAGAACTTTTTATTGGGTCAAGAATTGGCGAGGGAGGTCATGGGAGAGTTTATCAAGGAAGGTATAAAGATCAAAGAGTTGCAATTAAAGTTCTACATTGTAAGACCACTTCAGAAGAAAGAGCTTCCCTTGAAAAACGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTTCAGCACGACAATCTTCTTAAGTTTTATGGAGCTTGTAAGGATCCTCTGATGGTGATAGTTACAGAGCTGTTACCAGGAATGTCACTGAGAAAATATTTAATCAGTTTACGTCCCAAGCTATTAGACCTTCATGTTGCTATAAAATTTTCACTTGATATTGCTCGAGCCTTGGAATGCCTACATGCCAATGGGATCATACATAGAGATCTGAAACCTGACAATCTGCTACTTACGGAAAATCAGAATTCTGTTAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAAACTGTGACTGAAATGATGACTGCAGAAACTGGAACATACCGTTGGATGGCACCTGAGATGTACAGTAACATGACATTGCGTCAGGGACATAAAACGTACTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTAATAACAAACCGAATGCCATTCGGAGGGATGTCCCATTTCCAGGCTGCTTATGCTGCTGGTTTTAAGGTGCAACATTAG	792	0.4091	MSSSDRNRGEEKECDESVLITTPQLNIDENLLVDPRELFIGSRIGEGGHGRVYQGRYKDQRVAIKVLHCKTTSEERASLEKRFAREVNMMSRVQHDNLLKFYGACKDPLMVIVTELLPGMSLRKYLISLRPKLLDLHVAIKFSLDIARALECLHANGIIHRDLKPDNLLLTENQNSVKLADFGLAREETVTEMMTAETGTYRWMAPEMYSNMTLRQGHKTYYNNKVDVYSFGIVLWELITNRMPFGGMSHFQAAYAAGFKVQH	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g2036	263	SUPERFAMILY	Protein kinase-like (PK-like)	22	255	IPR011009	-
	Glsi06g2036	263	CDD	STKc_MAP3K-like	44	260	-	-
	Glsi06g2036	263	Gene3D	Transferase(Phosphotransferase) domain 1	119	261	-	-
	Glsi06g2036	263	FunFam	Kinase suppressor of Ras 1	27	117	-	-
	Glsi06g2036	263	Pfam	Protein kinase domain	42	249	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g2036	263	ProSitePatterns	Protein kinases ATP-binding region signature.	44	65	IPR017441	GO:0005524
	Glsi06g2036	263	SMART	serkin_6	38	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g2036	263	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	34	256	-	-
	Glsi06g2036	263	PIRSF	ILK	7	260	-	-
	Glsi06g2036	263	ProSiteProfiles	Protein kinase domain profile.	38	263	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g2036	263	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	158	170	IPR008271	GO:0004672\|GO:0006468
	Glsi06g2036	263	Gene3D	Phosphorylase Kinase; domain 1	26	117	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g2036	Glsi-ChrGlsi06	67675362	67678585	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g2036	27	260	MAP Kinase Kinase Kinase	AT5G01850	71.318	8.92e-133	377

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Glsi06g2036		Pkinase	6.1e-49	CL0016