Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g2026 ATGTGCTTAAAATTCAAAAACTCCTACTCTGAGTTTGATAAGGACATAGCTACTTTTAAGCTGTCCTTGTCCATCCTTGAAGAGATTGGGTTTTTAAATTACTGCCCATGTCTATTCTGTGCTCAAGTTCCTGAAGCAGGTACGAATCTGAGTGGTCATTTGATGTCAAAGTATGATGTCTGTGAAGATGAAATGGAACCAAAAGGAAGTGTGCTTATGCAACGATATGAACTAGGGAGATTATTAGGCCAAGGAACCTTTGCAAAGGTCTACTATGCAAGGAACCTCATGACTGGCATGAGTGTGGCCATTAAGATAATTGATAAAGAGAAGATTTTGAAAGTGGGGATGATTGATCAGATTAAGAGAGAAATTTCAGTAATGAGACTAGTTAGACATCCACATGTGGTTGAGCTTTATGAGGTAATGGCTAGTAAAACCAAGATTTACTTTGTCATGGAGTATGCAAAAGGAGGTGAACTGTTCCATAAGGTAGCCAAAGGAAAGCTGAAGGAGGATGTTGCTAGGAGATACTTTCAGCAACTGATCAGTGCTGTTGACTATTGCCACAGCAGAGGGGTGTGTCATCGGGATCTAAAACCAGAAAATCTGCTATTGGATGAAAATGGGAATTTGAAGGTTTCAGATTTTGGGCTGAGTGCCCTTGCTGAATCTAAGCACCAAGATGGATTACTCCATACTACATGTGGTACCCCTGCATATGTTGCTCCAGAAGTGATAAACAGAAAAGGTTATGATGGGTCCAAAGCTGATATATGGTCATGTGGGGTGATCTTGTATGTTCTATTGGCAGGTTATCTTCCCTTCCATAACTCAAATCTGATGGAGATGTACAAGAAGATTGGTAAGGGGGAATTCAAATTTCCTAACTGGTTTGCACCAGATGTACGTCGGTTGTTGTCCAAAATCATGGATCCTAATCCAAACACCCGAATATCGATGACAAAAATTATGGAAAATTCTTGGTTCAGAAAGGGATTAGAAAAGCCTGTTGTTACTGAGACTGAAGAGAAAGAAGTAGCTCCTTTGGATGCTGATGGAGTATTTGGAGCTTGTGAGAATAGCTGTCCTATTGCAGAGACCAAACAAGAACTCACAAAACCTTGTAATTTGAATGCTTTTGATATAATATCCTTTTCTGCAGGTTTTGACTTGTCTGGTCTGTTTGAGGAGTCTGATAAAAAAAGAGAGGTGAGGTTTACATCCAACAAGCCAGCCTCAATTATAATCTCCAAGTTAGAAGAAATCTGTAAGCGTCTTCACCTAAAAGTGAAGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGAATCCAAGGAAGGCAGGAAAGGGGCTTTGGGTATTGATGCTGAAATATTTGAGATCACCCCACTCTTCCATATGGTGGAGCTTAAAAAGTCCAGTGGAGATACATTGGAGTACCAAAAGCTTCTGAAACAGGACATTAGACCAGCACTTAAGGACATAGTTTGGACTTGGCAAGGAGAACAACCTCAGCAATTCCAGCCAGAAGTAGTGCTGAATGAGCAACAGCCTTCTGATGCTCCCCAGTCAGAAGTTGTATCACAATCAACTTCATGA 1599 0.4059 MCLKFKNSYSEFDKDIATFKLSLSILEEIGFLNYCPCLFCAQVPEAGTNLSGHLMSKYDVCEDEMEPKGSVLMQRYELGRLLGQGTFAKVYYARNLMTGMSVAIKIIDKEKILKVGMIDQIKREISVMRLVRHPHVVELYEVMASKTKIYFVMEYAKGGELFHKVAKGKLKEDVARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRKGYDGSKADIWSCGVILYVLLAGYLPFHNSNLMEMYKKIGKGEFKFPNWFAPDVRRLLSKIMDPNPNTRISMTKIMENSWFRKGLEKPVVTETEEKEVAPLDADGVFGACENSCPIAETKQELTKPCNLNAFDIISFSAGFDLSGLFEESDKKREVRFTSNKPASIIISKLEEICKRLHLKVKKKDGGLFKLEESKEGRKGALGIDAEIFEITPLFHMVELKKSSGDTLEYQKLLKQDIRPALKDIVWTWQGEQPQQFQPEVVLNEQQPSDAPQSEVVSQSTS 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g2026 532 CDD STKc_SnRK3 75 329 - -
Glsi06g2026 532 Gene3D Phosphorylase Kinase; domain 1 66 155 - -
Glsi06g2026 532 Gene3D Kinase associated domain 1, KA1 373 498 - -
Glsi06g2026 532 FunFam Non-specific serine/threonine protein kinase 373 497 - -
Glsi06g2026 532 Gene3D Transferase(Phosphotransferase) domain 1 156 358 - -
Glsi06g2026 532 Pfam Protein kinase domain 76 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2026 532 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 70 493 - -
Glsi06g2026 532 CDD CIPK_C 379 493 - -
Glsi06g2026 532 SMART serkin_6 76 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2026 532 FunFam Non-specific serine/threonine protein kinase 67 155 - -
Glsi06g2026 532 SUPERFAMILY Protein kinase-like (PK-like) 72 331 IPR011009 -
Glsi06g2026 532 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Glsi06g2026 532 ProSiteProfiles Protein kinase domain profile. 76 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g2026 532 Pfam NAF domain 375 433 IPR004041 GO:0007165
Glsi06g2026 532 FunFam Non-specific serine/threonine protein kinase 66 352 - -
Glsi06g2026 532 ProSiteProfiles NAF domain profile. 373 397 IPR018451 GO:0007165
Glsi06g2026 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g2026 Glsi-ChrGlsi06 67559113 67560824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g2026 65 505 CBL-interacting serine-threonine protein kinases AT5G58380 67.912 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi06g2026 Pkinase 2.6e-76 CL0016