Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1976 ATGGGAAACAATAATCGGTATGTCAAAGGTTTTCCCACAAATGATGTTCCAAATCATTCATTCCGACCCATTTCTCATTTCTTCTTTTGGAACAATGTTTCCATCTGGTTCGTCTTCTTCCTGGTTCTTCAAGCTCTGGCTTCTCCATTTCAACCAGTCTCAGGTCATTGGTGGGATGGGGTCGTGCTCACACAGGCAGACTATCAAACTCTAAGGGCTATTAAGCATGAAATGATAGACTTCAATGGAGTTCTGAGAAGCTGGAATGACAGTGGTCTTGGAGCATGTTCCGGTGGCTGGGCAGGAATCAAGTGTGTGAATGGACAGGTTATTGCAATCCAGCTCCCATGGAAGGGATTGGGTGGTCGAATTTCAGAGAAAATTGGTCAGCTTCAAGCTCTTAGGAAGCTCAATCTCCATGACAATGTTCTTGCTGGTCCTGTCCCTTGGTCTCTTGGCTTTCTCCCTAATCTCAGAGGGGTTTATCTATTCAATAATAGGCTTTCGGGTTCTATTCCTGCTTCCATTGGTAATAGCCCTATGCTTCAGTCTTTGGACATTAGCAACAACTCACTCACAGGTAAAATACCTCCTAGCTTAGCAAACTCCACTAGATTATTCAGACTCAATTTAAGCTTCAATTCTCTTTCTGGATCCATTCCTAGCAGTTTCACTAGGTCCACTTCTCTGACTGTTCTTGCTCTTCGAAACAACAATTTATCTGGTTCTATCCCAGATTCTTGGGGTGGAATGGGAAACAAAACTTCCCAACTTCAGTTCTTGACCCTTGATCACAATGTCATTTCTGGTACCGTCCCAATTTCTTTAAGTAAGCTGGGTTTGCTTCAAGAGATTTCTTTAAGCCATAATCAGATTGTGGGGTCTATTCCAAGTGAACTAGGTGGACTTTCGAAGCTTCAAATTCTTGATCTATCAAACAATGCCATCAATGGAAGCTTTCCTGGTAGCATTTCTAATCTCTCTGCTCTTGTTTCATTAAACCTGAAGAACAATAAGCTTGACGGCCAAATCCCACCAACAATTGGAAACATCTCAGGTCTTACCCAGGTTGATTTCTCTGAAAATAAACTTGTGGGAGAAATCCCAGATTCCCTAACTAAACTTGCAAATCTGAGTTCTTTCAATGTTTCTTACAACAATCTGTCTGGCCCTGTCCCTTCCCTCCTTACCAAAAGATTCAATTCAAGCTCTTTTACTGGGAATCTTCAGCTATGTGGGTATAGCTCTTCAAAACCATGCCCTTCACCCCCACCTCACAATCTTCCATCTCCAACCCCAGGGCTTTCTTTGAAGCCTAAACACCACCATAAATTAAGCGTCAAGGACATAATCCTCATAGTAGCAGGTGCTCTGCTTGTGATTCTTCTACTTCTTTGCTGTATTTTGCTCTGTTGTTTGATCAGAAAAAGGGCCGCTTCCAAAGGAAAGAATGGAAAAATATCAAAAGCAGCCACTACCAGAAGTGTTGAAAAAGGTGCCCCAGCTGGTGCTGAATTTGAATCAGGAGGTGAAGCAGGAGGAAAACTAGTTCACTTTGATGGGCCATTTGTATTTACAGCTGATGATCTTTTGTGTGCCACTGCGGAGATAATGGGTAAAAGTGCTTATGGAACAGCATACAAGGCGACGTTGGAGGATGGGAACCAAGTTGCTGTGAAAAGGTTGAGGGAGAAGACTACAAAAGGGCAGAAGGAGTTTGAAACTGAGGTTGCCGCACTTGGCAAAATTCGACACCCAAATCTCCAAGCCCTTAGAGCCTACTACTTGGGTCCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGCCCAAAGGAAGTCTAGCATCATTCCTTCATGCTAGGGGACCAGAAATTGTCATAGATTGGGCAACAAGAATGAGAATAGCCATTGGAGTGACTCGGGGTCTGTGCTACCTCCACACCCAAGAGAACATAGTACATGGGAATCTCACCTCAAGCAACATACTATTAGATGAGCAGACAAATGCCCATATCACAGACTTTGGTCTTTCAAGGCTAATGACCACTTCTGCAAACACCAACATCGTAGCCACTGCAGGAAGCCTTGGTTACAATGCACCAGAGCTCACAAAGACTAAGAAACCAAACACAAAGACTGATTCTTATAGCCTTGGTGTCATCATTTTGGAGCTCTTAACTGGTAAGCCACCTGGGGAGCCAACCAATGGCATGGATTTGCCTCAGTGGGTAGCATCCATAGTGAAGGAAGAGTGGACAAATGAAGTGTTCGATTTGGAGCTCATGAGGGATGCAACAACCATAGGCGATGAGCTGCTTAATACACTGAAATTGGCTCTGCACTGTGTGGATCCATCCCCAGCAGCAAGGCCTGAGGTTCAGCAAATTCTTCAGCAGTTGGAGGAGATCAAACCAGACTTGGTTGCTGCCACTTCAGTGGATGATGATGGAGCTAAAGTCCCAACAACGGAATAA 2475 0.4396 MGNNNRYVKGFPTNDVPNHSFRPISHFFFWNNVSIWFVFFLVLQALASPFQPVSGHWWDGVVLTQADYQTLRAIKHEMIDFNGVLRSWNDSGLGACSGGWAGIKCVNGQVIAIQLPWKGLGGRISEKIGQLQALRKLNLHDNVLAGPVPWSLGFLPNLRGVYLFNNRLSGSIPASIGNSPMLQSLDISNNSLTGKIPPSLANSTRLFRLNLSFNSLSGSIPSSFTRSTSLTVLALRNNNLSGSIPDSWGGMGNKTSQLQFLTLDHNVISGTVPISLSKLGLLQEISLSHNQIVGSIPSELGGLSKLQILDLSNNAINGSFPGSISNLSALVSLNLKNNKLDGQIPPTIGNISGLTQVDFSENKLVGEIPDSLTKLANLSSFNVSYNNLSGPVPSLLTKRFNSSSFTGNLQLCGYSSSKPCPSPPPHNLPSPTPGLSLKPKHHHKLSVKDIILIVAGALLVILLLLCCILLCCLIRKRAASKGKNGKISKAATTRSVEKGAPAGAEFESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLQALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPEIVIDWATRMRIAIGVTRGLCYLHTQENIVHGNLTSSNILLDEQTNAHITDFGLSRLMTTSANTNIVATAGSLGYNAPELTKTKKPNTKTDSYSLGVIILELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDATTIGDELLNTLKLALHCVDPSPAARPEVQQILQQLEEIKPDLVAATSVDDDGAKVPTTE 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1976 824 Gene3D Phosphorylase Kinase; domain 1 538 609 - -
Glsi06g1976 824 SUPERFAMILY Protein kinase-like (PK-like) 536 806 IPR011009 -
Glsi06g1976 824 Gene3D Ribonuclease Inhibitor 214 420 IPR032675 -
Glsi06g1976 824 SMART LRR_typ_2 155 179 IPR003591 -
Glsi06g1976 824 SMART LRR_typ_2 279 302 IPR003591 -
Glsi06g1976 824 SMART LRR_typ_2 303 326 IPR003591 -
Glsi06g1976 824 SMART LRR_typ_2 375 398 IPR003591 -
Glsi06g1976 824 SMART LRR_typ_2 327 351 IPR003591 -
Glsi06g1976 824 FunFam Leucine-rich repeat receptor-like protein kinase 517 608 - -
Glsi06g1976 824 MobiDBLite consensus disorder prediction 416 435 - -
Glsi06g1976 824 CDD STKc_IRAK 538 803 - -
Glsi06g1976 824 SUPERFAMILY L domain-like 116 397 - -
Glsi06g1976 824 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 254 423 - -
Glsi06g1976 824 Gene3D Transferase(Phosphotransferase) domain 1 610 818 - -
Glsi06g1976 824 FunFam Leucine-rich repeat receptor-like kinase 67 177 - -
Glsi06g1976 824 Pfam Protein tyrosine and serine/threonine kinase 536 800 IPR001245 GO:0004672|GO:0006468
Glsi06g1976 824 Gene3D Ribonuclease Inhibitor 64 213 IPR032675 -
Glsi06g1976 824 Pfam Leucine rich repeat N-terminal domain 66 105 IPR013210 -
Glsi06g1976 824 PRINTS Leucine-rich repeat signature 182 195 - -
Glsi06g1976 824 PRINTS Leucine-rich repeat signature 303 316 - -
Glsi06g1976 824 FunFam Pollen receptor-like kinase 1 609 813 - -
Glsi06g1976 824 Pfam Leucine Rich Repeat 182 201 IPR001611 GO:0005515
Glsi06g1976 824 ProSiteProfiles Protein kinase domain profile. 532 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1976 824 Pfam Leucine rich repeat 301 340 IPR001611 GO:0005515
Glsi06g1976 824 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 257 803 - -
Glsi06g1976 824 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 253 - -
Glsi06g1976 824 MobiDBLite consensus disorder prediction 418 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1976 Glsi-ChrGlsi06 67036943 67040195 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1976 56 805 Receptor kinase-like Gene Family AT3G51740 68.814 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi06g1976 PK_Tyr_Ser-Thr 1.5e-39 CL0016