Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1973 ATGAACAACAATTTTGAGAATTCTAGAAAGATTTTTCTTGTGGATGGGAACTGCAGAAACGGGAAATCACGGAAGCGACGCAGTGGAAGTGGCTCTGTTGAAGATACTATTAAGAAGTGGAAAAAGCATAACAGGGAACTCGATTTTGACAAAAATGGAGTGAAGAAAATGATTCACAAAGTTCCAGCCAAGGGCTCAAAGAAAGGGTGCATGAGAGGTAAAGGTGGACCTCAGAATTCTGATTGCAACTACAGAGGCGTGAGGCAGAGGATTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCCATCAATGGTGGCAGAAAGCATGTGGGGAAGAAAGCAAATCGGCTCTGGCTTGGTACTTTCCCTACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCCAGAGCCATGTATGGTCCTTGTGCTCGTTTGAACTTTCCTGAGTATAATAACCTGGAACCCACATGCTCTAATGAATCCTCTTCAGCTTCATTTGGTCAGAAATCTCCCAGTGAATCTGCAGATGAATCCTCTAGTGGTTCTGAGATTGGAGCTTTGGAAGAAACGGAGGAGAAACATGATATCAAACCCAGAGAAAGTGAAGTCAAGGAGAGAGAAAGAGAGGAAGTTAAGGAGTGGATGAACATGGCCATGAATACTAGATCAGGTTATAGTTCTTCTGATACTACTACGGAACATGGGGTTCTGGTAAAGAGTGAAGAAACAATGGGAGAATCAGGGGAAACTGTTAGATCCTGTGAGTTGAGCTGCATAAAGGATGATAAGCTACAAGAATATGAGGATTTTAATGTTGTCAAACTTAAAACTGAAACATCCTTTGCCAAGAAACAGATGGAGGAAGTGATTTCTGAGATTCTGGAACTTTGTAGCAGCAACTGCTCAAAAAAGTGTAGCTCTGTTCACTCACAAAATGAGCAATATAAAACTCATGCCTGCGATGGTTGGTCTGATGGTTCTGAAGCCACGGATGATGGGCTTAGAGGTTTGAAATACAAGCTAAGAGTCCAGAGTAAACCTTCTAATGATTGCAAGATTGAGGCTCCCAACCATCTGAATAATGTGCAGGAGGCAGAGCTAGAAGTGGGTTATGATTATAGTTTCTTGAGACCTGATTATGATTTTGGCTTATTGGAAGAGAAAAACTTACTTAATATATGGTTTCCTCATATAGCTTCTTAA 1206 0.4163 MNNNFENSRKIFLVDGNCRNGKSRKRRSGSGSVEDTIKKWKKHNRELDFDKNGVKKMIHKVPAKGSKKGCMRGKGGPQNSDCNYRGVRQRIWGKWVAEIREPINGGRKHVGKKANRLWLGTFPTALEAALAYDEAARAMYGPCARLNFPEYNNLEPTCSNESSSASFGQKSPSESADESSSGSEIGALEETEEKHDIKPRESEVKEREREEVKEWMNMAMNTRSGYSSSDTTTEHGVLVKSEETMGESGETVRSCELSCIKDDKLQEYEDFNVVKLKTETSFAKKQMEEVISEILELCSSNCSKKCSSVHSQNEQYKTHACDGWSDGSEATDDGLRGLKYKLRVQSKPSNDCKIEAPNHLNNVQEAELEVGYDYSFLRPDYDFGLLEEKNLLNIWFPHIAS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1973 401 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 19 316 - -
Glsi06g1973 401 SUPERFAMILY DNA-binding domain 83 150 IPR016177 GO:0003677
Glsi06g1973 401 MobiDBLite consensus disorder prediction 187 209 - -
Glsi06g1973 401 CDD AP2 82 150 IPR001471 GO:0003700|GO:0006355
Glsi06g1973 401 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Glsi06g1973 401 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Glsi06g1973 401 MobiDBLite consensus disorder prediction 157 186 - -
Glsi06g1973 401 SMART rav1_2 83 155 IPR001471 GO:0003700|GO:0006355
Glsi06g1973 401 FunFam Ethylene-responsive transcription factor 2 82 150 - -
Glsi06g1973 401 Gene3D AP2/ERF domain 83 150 IPR036955 GO:0003700|GO:0006355
Glsi06g1973 401 MobiDBLite consensus disorder prediction 157 209 - -
Glsi06g1973 401 ProSiteProfiles AP2/ERF domain profile. 83 149 IPR001471 GO:0003700|GO:0006355
Glsi06g1973 401 Pfam AP2 domain 82 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1973 Glsi-ChrGlsi06 67023490 67024695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1973 24 234 AP2-EREBP Transcription Factor Family AT2G40340 41.256 6.07e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi06g1973 AP2 2.7e-14 CL0081