Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1955 ATGGAAGAGGCAAGCCAGAGCTCGGAATGTTCCAAGACAAGCCCTTCTAAAAGCGAGGCCAATATTGAAGAAGAAGGAAATCAAAACCAGAACGTTAATAATAATGGAGGAAGCTCAAGCAATAGCACAGTGGAAGAGAGCGAGAAGAAGCCATCAGTGAGGCCTTATGTTAGATCCAAGTTGCCCCGGCTCCGGTGGACCCCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGAGAAGAGAGAGCAACACCAAAGTTGGTTCTCCAATTAATGAACATCAAAGGTTTGAGTATCGCACATGTTAAGAGTCATTTACAGATGTATAGGAGCAAGAAGGTAGATGACCCAAACCAAGTTTTGGCTGATCAAAGGCATTTCCTAGAAAGTGGAGACAGAAATATTTATAATCTCAGCCAACTTCCCATGCTTCAAGGTTATAATCCTAGCAAAAGTTCAACTTTCAGATATGGATATGGAGATGCTTCTTCTTTGGGTGTCTATGACAATATGGTGCATAGACCTTTCATGGGTCGGAGTCCAATAGATGAATCTGGAGCTCCATTTCATAGCATTTTCCGAGTGGATACTTCCAATTTTGCGAAACCATCAACAAGAAGTAAAATTTACGAACAAAGAGATGAAGTTTTCTCATTTGGACCCAAGATTGATCTTAACCCATTGACCCATGTAGAGCCAAGAGCGCAAGAGCTTATGCCTATGAAAGAATTGATGATCAACCCACAAGAGATAAAGACACTGAAAAGGAAGGCTACAGATATTGATGATGATCATCACCTTGATTTGGATCTATCACTGAAGTTAAATTCGAGGGTTGACGTTGAGAATATTAATAAAGCAAGAAATTTGGAGGAGAATGAAGTTGATAGCAATCTCTCACTCTCTTTGTACTCTCATTCTTCATCCTCTGAGAATCTTAGCAGAAGGTTGAAGGAAGGAGAAGAACATTGTAAGGAGCAAGCGAAGAAAGGGCTAGTACTCTGGATCTGA 1023 0.4096 MEEASQSSECSKTSPSKSEANIEEEGNQNQNVNNNGGSSSNSTVEESEKKPSVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGEERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVDDPNQVLADQRHFLESGDRNIYNLSQLPMLQGYNPSKSSTFRYGYGDASSLGVYDNMVHRPFMGRSPIDESGAPFHSIFRVDTSNFAKPSTRSKIYEQRDEVFSFGPKIDLNPLTHVEPRAQELMPMKELMINPQEIKTLKRKATDIDDDHHLDLDLSLKLNSRVDVENINKARNLEENEVDSNLSLSLYSHSSSSENLSRRLKEGEEHCKEQAKKGLVLWI 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1955 340 SUPERFAMILY Homeodomain-like 61 116 IPR009057 -
Glsi06g1955 340 FunFam Myb family transcription factor 60 118 - -
Glsi06g1955 340 Gene3D - 61 118 - -
Glsi06g1955 340 NCBIfam myb-like DNA-binding domain, SHAQKYF class 62 117 IPR006447 GO:0003677
Glsi06g1955 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 118 IPR017930 -
Glsi06g1955 340 Pfam Myb-like DNA-binding domain 64 114 IPR001005 -
Glsi06g1955 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 39 211 IPR046955 GO:0003700
Glsi06g1955 340 MobiDBLite consensus disorder prediction 1 46 - -
Glsi06g1955 340 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1955 Glsi-ChrGlsi06 66891416 66892913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1955 53 132 G2-like Transcription Factor Family AT2G42660 67.059 4.00e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi06g1955 Myb_DNA-binding 1.5e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1955 06 66891416 66892913 Glsi06g1955 06 66891416 66892913 ECH