Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1940 ATGCACATTCCAAATGAACTAATATGCTGTCTGCTTGAGGAGCATAAAATAAAAATCATCTTCGCAGAGAGAGACAGAGATAGTGAGAAAGAGAGAAAGAAGAAGAACCTGCCTCGGTTGTATGAGATCCAGAGTATGAGCACTGAAACGAAAGAATTCCCTCAAGGTTTGAGGATTCTCTTGGTAGACAATGATTTCACAAGTTTAAGAATGACAGAAGAAATGTCTTTACAATGTCAATATCAAGTTACCAAGTGTTCAGAGGCTATTGTAGCTTTAAATCTTCTGCGGGAGATGAAAGGCTGTTTTGATCTGGTGCTTATAGATGTTAATATCCCAGACATGGATGGCTTTGAATTCGTCAAACGTATTCAGTTTGAAATGAATCTTCCTGTCATTATTATGTCTTCGGATGATAGAACAAGTGCCGTAATGAAGGCACTGAAAAATGGTGCTTGTGATTATTTGATTAAGCCGGTACGCCAGGAAGTACTGAGAAATATATGGCAGCATGTTTGGAAGAGGAAGTTGAATGAAAACAAAGAACATGAAAATTCTGGGTGTTTCGAAGATAATGATCGGAATCAATATACTTCTCTTCCTGATCAAAGAGAAGTAATGGTTAAACTACCCATGAAGAGAAGCATTTCAAAAGAAGATGAAGATGGTGAACTAGTGAATGATGATCCACCAGCATCAAAGAAGCCTCGCGTAGTCTGGTCAGTGGAACTGCATCAACAATTTGTCAGTGCTGTGAAAGAACTCGGTCTTGATAAGGCTGTGCCAAAGAGGATTCTTGAATTGATGAATATCCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATATAGGCTTTATTTAAAGAGACAGGTAAGTGAAGAAGACCACCACCAACAGAATGGGATGTCAAACACAATCGGTTATGTAGAATCCAAGCTTGGTGGGCTTGGAAGCGTAGATATTGAAGTTTTGGCTGCTGCTGGCCAAGTTTCTCCTCAGACACTAGCATTGCAAACAGTGGACCAGGCTTCCCTTCTTCATGCATCGATACAGCGTCCCAACAATTTTCCTCACTCCATCGTAACCCTAGACGATGCTCATTCGGGATTAGAAGCATGGTCACATTCTAATGCAATTGGTTCCGTGGGACCCAATGGTAATCTTGGAGAGATCGGTGTTCACAACAAAAACATTCTATTAAATATATTACACCAACAGCGCCTTCACCAGCAAAAACAGCAACAATTGCTATTACATAATCAAAGTCATTCCTTCAATACTGTTCAACCATCTTGCCTACTGGTCCCCTCTCAATCTACAGGCACTTTCCTGGCAGGAAATAGTTCTGTTTCCGTCAACCATAGTAGCAGCTATGGTAGGGCTAATGCTCCTATTGATAGTAGTAGTTTCTTCGCACCTCAATCAAATGATTCTTCGTCGAGTATTTCTCGATGTGCTGGTGGCAATGGGTATAGATCTCTAGGCACTATTTCTCCATCAACATCACTACCTTCTTGTTCAAGCCAGCAGCTTCATAACTCAACTTTGACTTATTATTCCGCAAGACCCTTGCAAAGTCTTGCACCTAATCACTCTGATACACAAGGTCCTTATGGAACTCAATCTGGTGACGCACTTGAACAAGCAGCTATTAAGAATCTTGGATTTGTTGGTAAAGGAACCTGCATTCCAAGCAGTTTTTCTGCACTTGAAATTGAATCATCTATAAATGACTTAAGTCAAGGACAAATCTCTGTAGATAGCAATGGAAACACAGTGAATGAGCCAAATATCGATTTGGTAGATAATCCAGAAGTGGGCATCCCAGTCTTACAAAGATATTCATCTCTTTATCACATGACCATGGCTAGCACTGAACCTGAGCACCGAGAAGACGAAGACACCGGAGCTCAAGTGGCTCCGATCGTCAAACTCGATGGGGTTTCAGTCACCACCGGCGAGGAAGATGAAGACCCTATTTTTGATCTGAAAGCGAAGCTCTACCGATTTCATAAGGAAGGGAATCAGTGGAAGGAGAGAGGCGCTGGCAATGTAAAGCTTTTGAAACACAAGGAAAATGGAAAGATTAGGCTGGTTATGCGACAATCGAAGACTCTCAAGATCTGTGCAAACCATCTAGTTCAAGCTACAACAACAGTGCAAGAACATGCAGGAAATGATAAATCATGCCTTTGGCATGCATCTGATTTTGCGGATGGGGAATTGAAGAATGAACTATTCTGTATTAGATTCCCCTCTATTGAGAACTGTAAAACCTTCATGACAACAATGCAAGAGGTTGCTGAATCACAAGGAAGGGAGGAGGAAAATAAAGATGCTTCAGATACTGCAGTACTACTTGAGAAACTAACTGTTGGGGATAATAAAACAAAGGAGAAAGAGCAGGAAAAAGTCATTGTAACTGACAAGGAAGATAAGCAAGCTGTAGTCATGTCTTCTGATGATAGAACAAGTGCTGTAATGAAGGCACTAAGAAGTGGTGCTTATGATTATTTGATTAAGCCGGTACACCAGGAAGTACTGAGAAATATATGGCAGCATGCTTGGAGGAGAAAGTTGAATGAAAACAAAGAGCATGAAAATTCTGGGTGTTTGGAAGATAATTATCGGAATCAATATACTTCTCTTCTTTATCCAAGAGAAGTAATAGTTAAACCACCCATGAAGAGAAGCAGTTCAAAAGAAGATGAAGATGGTGAACTGGTGAATGATGATCCACCAGCATCAAAGAAGCCCCGTGTAGTCTGGTCAGTGGAATCGCATCAACAGTTTGTCAGTGCTGTGAAGGAACTTGGTTTTGATAAGGCTGTGCCAAAGAGGATTCATGAATTGATGAATATCCCTGGTTTGACAAAAGAAAATGTTGCAAGTCATTTGCAGAAATACAAGCTTTATTTAAAGAGGCAGGTAAGTGAAGAAGACCACCACCAACAGAATGGGATGTCAAACACAATCGGTTATGTGGAATCCAAGCTTGGTGGGCTAGGAAGGGTAGATATTGAAGCTTTGGCCGCTGCTGGCCAAGTTCCTCCTCAAACACTAGGAGTGCAGACAATGGAACATGCTTCCCTTTTTCATGCATCGATACAGCATCCCAAGAATTTTCCTCACTCCATCTTAACTGTAGATGATGCACCTTCAGGATTAGGAGCATGGTCACATTCTAACACAATTGGTTCCATGGGACCCAATGGTAATCTTGGAGAGATCGGTGTTCGCAACAAAAACATTCTATTAAATATATTACACCAACAGCGTCTTCACCAGCAGAAACAACAACAGCAACAGTTGCTAATACATAATCAAAGTCATTCACTCAATACTGTTCAACCATCTTGCTTACTGGTCCCCTTTCAATCTACAGGCACTTTCCAGGCAGGATTAGGAGTGCAAACAGTGGAACATGCTTCCCTTCATGCATCGATACACCATCCCAAGAATTTTCCTCACTCCATCTTAACTGTAGATGATGCACCTTCAAGATTAGGAGCATGGTCACATTCTAACGATTGGTTCCGTGGGACCCAATGGACTAATGTTCCTATTGATAGTAGTAGTCTCTTTGCACCTCAATCATATAATTCGTCGTCAAGTATTTCTCAATGTGCTGGTGGCAATGGGTATAGATCTCTAGGCACTATTTCTCCATCAACGTCACTACCTTCTTGTTCAATCCACCAGCTTCATAACTCAACTTTGACTTACTGTTCTGCAAGACCCTTGCAAAGTCTTGCACCTAATGAGTCTGACACACAAGGTTCTTATGGAACTAAATCTGGTGACGCACTTGAACAAGCAGCTGTTAAGAATCCTGGATTTGTTGGTAAAGGAACCTGCATTTCAAGCAGTTTTTCTGCACTTGAAATTGAATCATCTATAAATGACTTAAGTGACGGACAAATCTCTGTAGATAGTAATGACTGTAAAACCTTCATGACAACAATGCAAGAGGTTGTTGAATCACAAGGAAGGGAGGAGGAAAATAAAGATGCTTCAGATACTGCAGTACTACTTGAAAAACTAACTGTTGGGGATAATAAATCAGAGGAGAAAGAGCAGGAAAAAGTCACCGTAACTGACAAGGAAGATAAGCAAGCTGTAGACGGGTATGGAGATGTAATTAACTGTTTACTGGTTTTAAATCTTGTTTTGATCTGATCTACATTTAGAAATCTACTCCAGAGCGCAATTAGGATTTATTTCCGTTTTGTGGTGCCTATTCACTGCGGTGTTTTTGCAAATTATCCTTCAATTGGCTACTTTGCTGGGCTTCCAAAGATGTATGGATGGCTTAATAAAGGGAATGCCCAAAGTTGGATGTGA 4353 0.4082 MHIPNELICCLLEEHKIKIIFAERDRDSEKERKKKNLPRLYEIQSMSTETKEFPQGLRILLVDNDFTSLRMTEEMSLQCQYQVTKCSEAIVALNLLREMKGCFDLVLIDVNIPDMDGFEFVKRIQFEMNLPVIIMSSDDRTSAVMKALKNGACDYLIKPVRQEVLRNIWQHVWKRKLNENKEHENSGCFEDNDRNQYTSLPDQREVMVKLPMKRSISKEDEDGELVNDDPPASKKPRVVWSVELHQQFVSAVKELGLDKAVPKRILELMNIPGLTRENVASHLQKYRLYLKRQVSEEDHHQQNGMSNTIGYVESKLGGLGSVDIEVLAAAGQVSPQTLALQTVDQASLLHASIQRPNNFPHSIVTLDDAHSGLEAWSHSNAIGSVGPNGNLGEIGVHNKNILLNILHQQRLHQQKQQQLLLHNQSHSFNTVQPSCLLVPSQSTGTFLAGNSSVSVNHSSSYGRANAPIDSSSFFAPQSNDSSSSISRCAGGNGYRSLGTISPSTSLPSCSSQQLHNSTLTYYSARPLQSLAPNHSDTQGPYGTQSGDALEQAAIKNLGFVGKGTCIPSSFSALEIESSINDLSQGQISVDSNGNTVNEPNIDLVDNPEVGIPVLQRYSSLYHMTMASTEPEHREDEDTGAQVAPIVKLDGVSVTTGEEDEDPIFDLKAKLYRFHKEGNQWKERGAGNVKLLKHKENGKIRLVMRQSKTLKICANHLVQATTTVQEHAGNDKSCLWHASDFADGELKNELFCIRFPSIENCKTFMTTMQEVAESQGREEENKDASDTAVLLEKLTVGDNKTKEKEQEKVIVTDKEDKQAVVMSSDDRTSAVMKALRSGAYDYLIKPVHQEVLRNIWQHAWRRKLNENKEHENSGCLEDNYRNQYTSLLYPREVIVKPPMKRSSSKEDEDGELVNDDPPASKKPRVVWSVESHQQFVSAVKELGFDKAVPKRIHELMNIPGLTKENVASHLQKYKLYLKRQVSEEDHHQQNGMSNTIGYVESKLGGLGRVDIEALAAAGQVPPQTLGVQTMEHASLFHASIQHPKNFPHSILTVDDAPSGLGAWSHSNTIGSMGPNGNLGEIGVRNKNILLNILHQQRLHQQKQQQQQLLIHNQSHSLNTVQPSCLLVPFQSTGTFQAGLGVQTVEHASLHASIHHPKNFPHSILTVDDAPSRLGAWSHSNDWFRGTQWTNVPIDSSSLFAPQSYNSSSSISQCAGGNGYRSLGTISPSTSLPSCSIHQLHNSTLTYCSARPLQSLAPNESDTQGSYGTKSGDALEQAAVKNPGFVGKGTCISSSFSALEIESSINDLSDGQISVDSNDCKTFMTTMQEVVESQGREEENKDASDTAVLLEKLTVGDNKSEEKEQEKVTVTDKEDKQAVDGYGDVINCLLVLNLVLIXSTFRNLLQSAIRIYFRFVVPIHCGVFANYPSIGYFAGLPKMYGWLNKGNAQSWM 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1940 1450 ProSiteProfiles Response regulatory domain profile. 58 173 IPR001789 GO:0000160
Glsi06g1940 1450 Gene3D - 232 293 - -
Glsi06g1940 1450 Gene3D - 918 979 - -
Glsi06g1940 1450 FunFam Two-component response regulator 917 979 - -
Glsi06g1940 1450 ProSiteProfiles Ran binding domain type 1 profile. 641 776 IPR000156 GO:0046907
Glsi06g1940 1450 SUPERFAMILY CheY-like 55 184 IPR011006 -
Glsi06g1940 1450 SUPERFAMILY PH domain-like 644 771 - -
Glsi06g1940 1450 MobiDBLite consensus disorder prediction 897 917 - -
Glsi06g1940 1450 SUPERFAMILY Homeodomain-like 233 292 IPR009057 -
Glsi06g1940 1450 Pfam Response regulator receiver domain 59 167 IPR001789 GO:0000160
Glsi06g1940 1450 PANTHER TWO-COMPONENT RESPONSE REGULATOR 57 404 IPR045279 GO:0009736
Glsi06g1940 1450 Gene3D - 627 789 IPR011993 -
Glsi06g1940 1450 SMART ranbd_3 642 770 IPR000156 GO:0046907
Glsi06g1940 1450 FunFam Ran-binding protein 1 b 625 788 - -
Glsi06g1940 1450 SMART REC_2 57 169 IPR001789 GO:0000160
Glsi06g1940 1450 FunFam Two-component response regulator 231 293 - -
Glsi06g1940 1450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 291 IPR017930 -
Glsi06g1940 1450 NCBIfam myb-like DNA-binding domain, SHAQKYF class 235 288 IPR006447 GO:0003677
Glsi06g1940 1450 NCBIfam myb-like DNA-binding domain, SHAQKYF class 921 974 IPR006447 GO:0003677
Glsi06g1940 1450 Coils Coil 12 32 - -
Glsi06g1940 1450 CDD REC_typeB_ARR-like 59 173 - -
Glsi06g1940 1450 Pfam RanBP1 domain 653 770 IPR000156 GO:0046907
Glsi06g1940 1450 Pfam Myb-like DNA-binding domain 923 973 IPR001005 -
Glsi06g1940 1450 Pfam Myb-like DNA-binding domain 237 287 IPR001005 -
Glsi06g1940 1450 SUPERFAMILY Homeodomain-like 919 978 IPR009057 -
Glsi06g1940 1450 CDD RanBD_RanBP1 639 772 IPR045256 GO:0006913
Glsi06g1940 1450 MobiDBLite consensus disorder prediction 894 922 - -
Glsi06g1940 1450 Gene3D - 57 228 - -
Glsi06g1940 1450 Gene3D - 801 890 - -
Glsi06g1940 1450 SUPERFAMILY CheY-like 817 871 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1940 Glsi-ChrGlsi06 66577378 66594838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1940 757 978 Response Regulator Gene Family AT2G25180 36.161 6.43e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi06g1940 Ran_BP1 5.4e-39 CL0266