Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1929 ATGGATCAGGAACATCATCTTCATCCTCATCGTCTTCACCGTCAGCATCAGCTTCATCAGGCTCACGGCACTAGTGTCAACGTTGATGTTGGAGACAGGTTCCCTCAATGGAGCATCCAAGAAACGAAGGAGTTCTTAACGATCCGAGCAGAGCTCGACCAGAATTTCATGGAGACAAAGAGGAACAAGCCGTTGTGGGAAGTTATCTCCAACGCGATGAAGGACAAGGGCTATAATCGAAGCCCCGACCAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCAGGTACAAGGCATGGGAAGCGGAGCCAGAAACGATGAGGCAGCAATTCCCACTTTACAGTGAGCTTCAAGCGATTTTTGCGGCAAGGATGCAGAGAATGTTGTGGGCGGAAGCAGAAGGTACCGGGTCCAAGAAGAAGGCGGCGAAAATGGTGCAGCTCTCGTCGGAAGAAGAGGATGATAACGAGGAGAGTTATCAGGGAGAGGTAAAGGGTAGCAAAAGAAAGAAGAAAAAAAGGAAGATGATGAGTCCCGGCAGCAGTGGCAGCAGTGGTAGTAGTAGTATGAACAATTTGAAGGAGATTTTGGATGAGTTCATGAGGCAACAAATGCAAATAGAATCACAATGGGTGGAAGCGTTTGAGGCAAGAGAGAACGAGAGGAGGTTGAAGGAGATGGAGTGGAGGCAAGCCATGGAAGCTTTAGAGAATGAGAGGATAATGATGGACCAGAGATGGAGAGAAAGGGAAGAGCAAAGAAGGATTCGAGAAGAAGCTAGGGCTGAGAAGAGGGATGCTCTAATCACAGCTCTTCTAAACAAGCTCAGAAGGGAAGAAATGTAG 843 0.4804 MDQEHHLHPHRLHRQHQLHQAHGTSVNVDVGDRFPQWSIQETKEFLTIRAELDQNFMETKRNKPLWEVISNAMKDKGYNRSPDQCKCKWKNLVTRYKAWEAEPETMRQQFPLYSELQAIFAARMQRMLWAEAEGTGSKKKAAKMVQLSSEEEDDNEESYQGEVKGSKRKKKKRKMMSPGSSGSSGSSSMNNLKEILDEFMRQQMQIESQWVEAFEARENERRLKEMEWRQAMEALENERIMMDQRWREREEQRRIREEARAEKRDALITALLNKLRREEM 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1929 280 Pfam Myb/SANT-like DNA-binding domain 36 119 IPR044822 -
Glsi06g1929 280 SUPERFAMILY Homeodomain-like 35 109 IPR009057 -
Glsi06g1929 280 CDD GT1 35 97 - -
Glsi06g1929 280 MobiDBLite consensus disorder prediction 132 189 - -
Glsi06g1929 280 SMART sant 33 95 IPR001005 -
Glsi06g1929 280 MobiDBLite consensus disorder prediction 1 22 - -
Glsi06g1929 280 PANTHER FI21293P1 20 276 - -
Glsi06g1929 280 FunFam Zinc finger and SCAN domain-containing 20 37 98 - -
Glsi06g1929 280 Coils Coil 189 209 - -
Glsi06g1929 280 Gene3D - 37 98 - -
Glsi06g1929 280 ProSiteProfiles Myb-like domain profile. 37 93 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1929 Glsi-ChrGlsi06 66458463 66459833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1929 10 278 Trihelix Transcription Factor Family AT2G38250 55.882 1.40e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi06g1929 Myb_DNA-bind_4 1.3e-19 CL0123