Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1925 ATGGCTTCCAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTACAGTGCTAGAAGGGCCGGCGTTGTTCGTGCTTTGACTCAAGATGTGGATGAATTTTATGGGCTCTGCGATCCGGATAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAGAGCTGGGAAGTAACTCTGCCGGCAGAGGAAGTTCCCCCTGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAATCGCAGGGACTGGCTTTCTCTAGTCGCTGTCCACAGTGATTCGTGGCTTCTTTCTGTGGCTTTTTATCTTGGAGCCCGTCTTAACCGCAATGAAAGGAAACGTTTATATAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAGCCAATAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGTCTCGTGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTGACAGATGAGGGTTATGAGGAGGATGAAGATGAACATAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAATTACAATGCAGATGAATTTTGGATTGGCTGCGATATATGTGAGAAGTGGTTCCACGGGAAATGTGTGAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAATATAAATGCCCATCCTGCAGCATGAGGCGTGGCAAGCCCTAG 714 0.4748 MASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLYSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKLTDEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCSMRRGKP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1925 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 231 IPR013083 -
Glsi06g1925 237 PANTHER CPG BINDING PROTEIN 4 235 IPR045104 GO:0006355|GO:0042393
Glsi06g1925 237 FunFam PHD finger alfin-like protein 176 232 - -
Glsi06g1925 237 SUPERFAMILY FYVE/PHD zinc finger 172 235 IPR011011 -
Glsi06g1925 237 CDD PHD_AL_plant 183 233 IPR044104 -
Glsi06g1925 237 SMART PHD_3 183 231 IPR001965 -
Glsi06g1925 237 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Glsi06g1925 237 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Glsi06g1925 237 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Glsi06g1925 237 Pfam PHD-finger 184 231 IPR019787 -
Glsi06g1925 237 MobiDBLite consensus disorder prediction 146 164 - -
Glsi06g1925 237 MobiDBLite consensus disorder prediction 138 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1925 Glsi-ChrGlsi06 66398568 66401535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1925 2 236 Alfin-like Transcription Factor Family AT5G05610 76.695 7.77e-122 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Glsi06g1925 Alfin 6.5e-68 No_clan