Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1923 ATGGCAGAGCCACATTCCTCTGTCACTCCTTCTTCTTCCATGGTTAATCCGGATGATTCCGGAACTGCTTCTTCATCTTCGTCCGGTTCACAAGTCCAAGAAGAGGAATATGCAAGTGGGTATCCTCAATTTCAGTCCCCTGACCAAGAGCCCCAGCATTTGGGTATCACCTATAGACTAGTCCATTGGGTTTTCGATCATGCATCTTCGATAGTTAGCAGTGATACCTGGTCTTGCATCGTGGTCCTCTTCACGTTTTGGTCTTTTGTTTCGGTGATTATGATAATGGGGGTTTATGGGTCTATGAACCTACTGCTTACCCCAAATTCTTCCATGCTTATCCAACCCAATCCTCTATTCGTCCAACATATAAAGGTAGAAAACTTGTATGAGTCAGAGCCAGGAATTATGCTGCATGGTACATATGGATCTCCATCTCTTGATGTTGTTACCACTTGGACAGAAACTTGTAATCTATCTATTCCAACTTATTCTCGCAAGGAATGGAAATATTACTTGAATAGAGGGTCTCAAGTAAATATTTCATATTACCTGAGCTCAAAGAACTCCACTATTACCCTTGTAATTACAGAAGGCGATGAAGGCCTTACCCAGTGGCCCAATGAACCAAAATATCCTAATAACACTCTTTCGTGGAACGTAGTCAAGGGAACTGGTATGGTTACACAGGACATATATAGGTCTTCAAGCTATTATGTGGAAGTGAGTAATACGAATAAGGAGGTGGAGGTAAAATTGAACATCAGAGTAAGGGCCTTCTTATATAATACAACGGACGCTTACTATAAATGTGCTTTGACGAGTAACCCATGTGGTTTGAATGTTTTCTTTCCTGATGGAAATGCAGCTATTTTAACTTCTTCAGGTTCACAACAGAACACCTCAAGTGACGAGTGGCACATCAAATTGTCTTATGGACCAAGATGGATCACGTATATTTTTGGCATATGCGGAATGACTTGGCTTATGCTTTTGGTCTTCAACACCTTGGACAAGTGCCAGCACGCCCTTGCAGATAGAGCAGTTCAACATGGGGAACCAGCAACTCAGAGAGCCCCTTTACTTTCTTACAAAGATGATCATCTTTCAAATTGGGGTTCATCTTATGAATCCATACCACATGATGAAGAGGATCTTGACTTTCTCATTGGGGGATCTACTGTTGAGAAGTCTTCAGGTGATGGTGAAATCAGTAATAATACCCGGCGTCTTTGTGCAATTTGCTTTGATGCTGCAAGGGACTGCTTCTTCCTTCCATGTGGACACTGCGTGGCTTGTTTTGCATGTGGAACTAGGATAGCAGAAGCTGCTGGTACTTGCCCTGTTTGTCGAAGGAACACAAAGAAAGTGAGGAAGATTTTTACTGTTTAA 1392 0.4217 MAEPHSSVTPSSSMVNPDDSGTASSSSSGSQVQEEEYASGYPQFQSPDQEPQHLGITYRLVHWVFDHASSIVSSDTWSCIVVLFTFWSFVSVIMIMGVYGSMNLLLTPNSSMLIQPNPLFVQHIKVENLYESEPGIMLHGTYGSPSLDVVTTWTETCNLSIPTYSRKEWKYYLNRGSQVNISYYLSSKNSTITLVITEGDEGLTQWPNEPKYPNNTLSWNVVKGTGMVTQDIYRSSSYYVEVSNTNKEVEVKLNIRVRAFLYNTTDAYYKCALTSNPCGLNVFFPDGNAAILTSSGSQQNTSSDEWHIKLSYGPRWITYIFGICGMTWLMLLVFNTLDKCQHALADRAVQHGEPATQRAPLLSYKDDHLSNWGSSYESIPHDEEDLDFLIGGSTVEKSSGDGEISNNTRRLCAICFDAARDCFFLPCGHCVACFACGTRIAEAAGTCPVCRRNTKKVRKIFTV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1923 463 SMART ring_2 412 450 IPR001841 -
Glsi06g1923 463 Pfam Zinc finger, C3HC4 type (RING finger) 409 457 - -
Glsi06g1923 463 Pfam Domain of unknown function (DUF4792) 136 203 IPR032008 -
Glsi06g1923 463 ProSiteProfiles Zinc finger RING-type profile. 412 451 IPR001841 -
Glsi06g1923 463 PANTHER OS05G0521000 PROTEIN 66 463 - -
Glsi06g1923 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 462 IPR013083 -
Glsi06g1923 463 FunFam E3 ubiquitin-protein ligase APD2 401 462 - -
Glsi06g1923 463 MobiDBLite consensus disorder prediction 1 44 - -
Glsi06g1923 463 Pfam Domain of unknown function (DUF4793) 227 333 IPR032010 -
Glsi06g1923 463 SUPERFAMILY RING/U-box 411 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1923 Glsi-ChrGlsi06 66382676 66388467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1923 385 460 C3H Transcription Factor Family AT3G06140 31.579 1.58e-06 48.1