Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1915 ATGGGTACCCAACAACCAGAAGCATGGCTATTGGAAAATGGAAACCTCAAGGGTTTGAGCAGGGAGGTGAAGCATGGCCGAACGGCCCACAACATGTCCTCATCCTCCTTGCGCAAGAAATCTGACCTCGTCCTTGTTTCCAAAGTTCGACATGGGTTGCTCAGGAATTTGCTGGTTAATTTTCAAGAGGTCATTTTTGGGACCAAGCTCTCGATTCTGTTTCCTGCAATTCCCCTTGCCATTGTTGCCGAAGTCTATCGGTTTGGGCGACCCTGGGTTTTTGCGTTGAGCTTACTTGGACTCACACCACTTGCAGAGCGCGTCAGCTTCTTGACAGAACAAGTTGCTTATTACACGGGCCCCACAGTTGGAGGACTTTTAAATGCAACATGTGGCAATGTTACAGAGCTCATTATAGCAATATTTGCTCTCACCAATAATAAAATAGCAGTGGTCAAGTATTCTCTCTTGGGTTCAATCCTTTCAAACCTTCTTCTAGTTCTTGGAACCTCTCTCTTCTGTGGTGGAATAGCGAACATCCGAGTAGAACAAAAATATGACAGAAAACAGGCAGATGTGAACTCACTTATGCTGCTGCTGGCTTTATTGTGCCACTTGCTGCCAATGCTGTTCATATATTCCGGTGCCTCGGCTGCTCTCACTGCAGACCCATCTCTTCAATTATCAAGAGCTGCTAGTATTGTGATGCTGATTGCCTACTTTGCCTACCTTTTCTTTCAACTGTGGACACACCGCGACTTATTTGAAGCCCATAATGAAGATAAAGATGATGACAATGTTGCAGAAGAAGCAGTTATAGGATTTTGGAGTGGGTTTGCTTGGCTGGCTGGAATGACAGTACTCATTGCTATCTTGTCTGAGTACGTGGTAGAGACAATTGAGGATGCATCAGAATCATGGGGCCTGTCTGTCACCTTCCTTAGCATTATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGATATCTCATTAGGTGTTGCCTTGGGTTCTGCAACTCAAATTGCCATGTTTGTGGTTCCCCTGTGTGTGGTTGTTGCTTGGATAATGGGTATCAAAATGGACCTTAACTTCAATCTCCTAGAGACTGGCTCTCTTGCTTTGGCAATTATAGCCACAACCTTCGCGTTACAGGATGGAACTTCTCACTACATGAAAGGCCTTGTTCTCCTACTCTGCTACATTGTTATTGGGGCTTGCTTTTTCGTACAGAGAACACCATTGAACCAAGCTGATGTTGTTAACATGACCCTTAAACCAGCAACCGAAGCGGTTTTCAGAGTTTAA 1344 0.4479 MGTQQPEAWLLENGNLKGLSREVKHGRTAHNMSSSSLRKKSDLVLVSKVRHGLLRNLLVNFQEVIFGTKLSILFPAIPLAIVAEVYRFGRPWVFALSLLGLTPLAERVSFLTEQVAYYTGPTVGGLLNATCGNVTELIIAIFALTNNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRVEQKYDRKQADVNSLMLLLALLCHLLPMLFIYSGASAALTADPSLQLSRAASIVMLIAYFAYLFFQLWTHRDLFEAHNEDKDDDNVAEEAVIGFWSGFAWLAGMTVLIAILSEYVVETIEDASESWGLSVTFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVVVAWIMGIKMDLNFNLLETGSLALAIIATTFALQDGTSHYMKGLVLLLCYIVIGACFFVQRTPLNQADVVNMTLKPATEAVFRV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1915 447 Gene3D - 121 421 IPR044880 -
Glsi06g1915 447 FunFam Vacuolar cation/proton exchanger 266 422 - -
Glsi06g1915 447 NCBIfam calcium/proton exchanger 56 421 - -
Glsi06g1915 447 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Glsi06g1915 447 Pfam Sodium/calcium exchanger protein 278 416 IPR004837 GO:0016020|GO:0055085
Glsi06g1915 447 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 425 IPR004713 GO:0006812|GO:0008324|GO:0016020
Glsi06g1915 447 FunFam Vacuolar cation/proton exchanger 121 265 - -
Glsi06g1915 447 NCBIfam calcium/proton exchanger 75 421 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1915 Glsi-ChrGlsi06 66319825 66323878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1915 7 429 Antiporters AT2G38170 71.363 0.0 590
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1915 06 66319825 66323878 Glsi07g2032 07 64519614 64523866 CCT
Glsi06g1915 06 66319825 66323878 Glsi06g1915 06 66319825 66323878 ECH