Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1910 ATGCGCAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGATATCCACTTCGCCAACACCCTAGCTTCTGATTATCCAAGAGACTGCGATGGTGCCTGCCTCCAAATGAGATTGTCCTACAGTCCAGCTGCTCAATTTTTCCTTTTACTAGTTCAATGGACTGATTGTCACCTTGCCGGAGCCTTGGGATTGCTTAGAATTCTCATATACAAGGCATATGACGATGGGAAGACAACAATGTCAGTTTATGAAAGAAAAGCCAGTCTGAAGCAGTTCTATGGTGTGATCTTTCCCTCTTTATTACAACTACAAAGAGGAATCACTGATGTAGAAGAAAGGAAACAGAAAGATTTATGTGCTACTAAGTATAAGCCAAAAGATGTGATAAGCAAAGGAAAGATCTCTGAAATCGATAAAGAGAGAGAAGACGAATGTGGTATTTGCATGGAGGTGAACAGCAAGGTTGTATTGCCCAAATGCAATCACTCTATGTGCATGAAATGCTACCAAGACTGGCGTGCACTATCGCAATCTTGTCCTTTTTGTCGGGGTAGTCTGACAAGAGTTAACACAGATGACCTTTGGATCTACTTGAGCAGCAGTGAGATAGATGACTTGGCTTCAATCACTAAGGAGAATCTAATGAGGCTATTTATGTACACCGAGAAGTTGCCTCTCATAGTTCCAGATCCTATGTTCATGTCTTATCCTCATCACTCGAGAGAGCTCAGTTGTGGAAGAAGCTGA 750 0.4213 MRKSFKDSLKALEADIHFANTLASDYPRDCDGACLQMRLSYSPAAQFFLLLVQWTDCHLAGALGLLRILIYKAYDDGKTTMSVYERKASLKQFYGVIFPSLLQLQRGITDVEERKQKDLCATKYKPKDVISKGKISEIDKEREDECGICMEVNSKVVLPKCNHSMCMKCYQDWRALSQSCPFCRGSLTRVNTDDLWIYLSSSEIDDLASITKENLMRLFMYTEKLPLIVPDPMFMSYPHHSRELSCGRS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1910 249 FunFam RING/U-box superfamily protein 127 193 - -
Glsi06g1910 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 195 IPR013083 -
Glsi06g1910 249 SMART ring_2 146 183 IPR001841 -
Glsi06g1910 249 PANTHER RING FINGER PROTEIN 41, 151 3 245 - -
Glsi06g1910 249 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Glsi06g1910 249 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Glsi06g1910 249 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Glsi06g1910 249 SUPERFAMILY RING/U-box 135 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1910 Glsi-ChrGlsi06 66283158 66286250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1910 90 185 C3H Transcription Factor Family AT5G01960 29.703 1.74e-07 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1910 06 66283158 66286250 Glsi07g2028 07 64476702 64479775 CCT
Glsi06g1910 06 66283158 66286250 Glsi06g1910 06 66283158 66286250 ECH