Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1907 ATGAAGACTAGCAGCAAAGGGAAAGGAGTAGTAAAGAACTCAAAGGAAGCACTGAAGCCTGTTGATGATCGAAAGGTTGGCAAGCGAAAGGCTACTTCTAAGCCTAACAAGAGTAGCAAACCAAAAGCCAAGAAGGAGAGGAATGCCAAGAAAGATCCCAACAAACCGAAAAGACCTCCCAGTGCCTTTTTTGTCTTCCTTGAGGAGTTCAGAAAAACCTTTAAGGCAGAAAATCCTGGCGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCGTTGACAAGTGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAAGAAAGCTGAGTACGAGAAACTTATGAATTCATATAATAAAAAGCAGGCAAGCTCGGCCAATGATGGAGACGAAGAATCAGACAGGTCCAAATCTGAAGTGCATGATGACGAGGATGAAGCCAGTGGAGAGGAGGGGCACCAAGAAGAGGAGGATGAGGAGGAAGACGAAGAAGATGAGGAGGATGAGGATGACTGA 534 0.4551 MKTSSKGKGVVKNSKEALKPVDDRKVGKRKATSKPNKSSKPKAKKERNAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPGVKAVSAVGKAGGEKWKSLTSAEKAPYEAKAAKKKAEYEKLMNSYNKKQASSANDGDEESDRSKSEVHDDEDEASGEEGHQEEEDEEEDEEDEEDEDD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1907 177 Pfam HMG (high mobility group) box 56 125 IPR009071 -
Glsi06g1907 177 MobiDBLite consensus disorder prediction 150 177 - -
Glsi06g1907 177 MobiDBLite consensus disorder prediction 30 44 - -
Glsi06g1907 177 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 14 164 IPR031061 -
Glsi06g1907 177 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 56 125 IPR009071 -
Glsi06g1907 177 MobiDBLite consensus disorder prediction 12 29 - -
Glsi06g1907 177 MobiDBLite consensus disorder prediction 87 177 - -
Glsi06g1907 177 SMART hmgende2 55 126 IPR009071 -
Glsi06g1907 177 MobiDBLite consensus disorder prediction 131 149 - -
Glsi06g1907 177 Gene3D High mobility group box domain 38 141 IPR036910 -
Glsi06g1907 177 MobiDBLite consensus disorder prediction 1 60 - -
Glsi06g1907 177 MobiDBLite consensus disorder prediction 106 121 - -
Glsi06g1907 177 SUPERFAMILY HMG-box 49 128 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1907 Glsi-ChrGlsi06 66263072 66264718 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Glsi06g1907 HMG_box 3.7e-24 CL0114