Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1905 ATGGTATTAGCAATGATAGGCAACTGCTTTAGTGCCTTGAATTGGTGTAAAGGGAGGAACGATCATGCTAGCCAGTCAAATGAACAAGTGATTGCAACTAAAACTTTTAGTTATAACTCATTGAGATCAGCGACAGGAGATTTTCATCCATCTAGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGACGGTACTCAAGTTGCTATCAAGTCTCTTTCTGTAGAGTCTACACAAGGAACAAAAGAATTTATGACAGAAATTGATATTATATCAAATATACAACATCCAAACCTTGTGCAACTAGTTGGCTGCTGTGTTGAGGGCAACCATCGGATTTTGGTGTATGAATTTCTGGAAAACAATAGCCTTGCGAGTTTTTTGCTTGGTTCCAAAAGCAAATGTCTTGCACTAGATTGGCCAAAGAGGGCTGCTATCTGCTACGGTACAGCTTCTGGTCTTGCATTTCTTCATGAGGAGGCTCAGCCAATGATTGTTCACAGAGATATCAAAGCTAGCAACATACTGCTTGATGGGAACTTTAATCCTAAAATAGGGGATTTTGGCCTTGCAAAACTTTTCCCTGACAATGTCACTCATGTTAGTACTCGAGTCGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTAGGACAGCTTACAAAGAAAGCGGATGTATACAGTTTCGGGGTTCTCATGCTTGAAATAGTCAGTGGTAAAAGTAGTAGTAAAGCTGCATTTGAAGAGAATCTCTTGGTTCTAGTGGAATGGACTTGGAAGCTAAAAGAAGAAAATAGGCTTCTGGACATTGTTGATCCCGAACTAGCCGAATATGATGAGATTGAGGTTTTGCAATTCATTAAGGTTGCTCTATTCTGTACCCAAGCAGCTGCACAGCATAGACCCACCATGAAGCAAGTGATAAAAATGCTTTCCAGGGAAGTACGCTTGAATGAAAAGGCATTGACTGAACCTGGAATTTATAGGTGGCATACCTCTAAAAAGTCGGGCAGTTCTTCCTCGGATGGGATATCTAAGTTCAAGGATTCTAAAAATCCAGATGTGACATCAATCCACTTTAGTGGTGCTGATTTTGAGACACAGATGCTTCCTAGATGA 1140 0.4088 MVLAMIGNCFSALNWCKGRNDHASQSNEQVIATKTFSYNSLRSATGDFHPSSKIGGGGYGVVYKGVLRDGTQVAIKSLSVESTQGTKEFMTEIDIISNIQHPNLVQLVGCCVEGNHRILVYEFLENNSLASFLLGSKSKCLALDWPKRAAICYGTASGLAFLHEEAQPMIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEIVSGKSSSKAAFEENLLVLVEWTWKLKEENRLLDIVDPELAEYDEIEVLQFIKVALFCTQAAAQHRPTMKQVIKMLSREVRLNEKALTEPGIYRWHTSKKSGSSSSDGISKFKDSKNPDVTSIHFSGADFETQMLPR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1905 379 FunFam Putative LRR receptor-like serine/threonine-protein kinase 124 330 - -
Glsi06g1905 379 Gene3D Phosphorylase Kinase; domain 1 12 123 - -
Glsi06g1905 379 CDD STKc_IRAK 67 320 - -
Glsi06g1905 379 FunFam cold-responsive protein kinase 1 19 123 - -
Glsi06g1905 379 Pfam Protein tyrosine and serine/threonine kinase 51 318 IPR001245 GO:0004672|GO:0006468
Glsi06g1905 379 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 348 - -
Glsi06g1905 379 MobiDBLite consensus disorder prediction 339 353 - -
Glsi06g1905 379 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
Glsi06g1905 379 SMART serkin_6 48 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1905 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Glsi06g1905 379 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Glsi06g1905 379 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Glsi06g1905 379 ProSiteProfiles Protein kinase domain profile. 48 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1905 379 MobiDBLite consensus disorder prediction 339 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1905 Glsi-ChrGlsi06 66228600 66234340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1905 35 347 Receptor kinase-like Gene Family AT1G56120 53.355 6.12e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi06g1905 PK_Tyr_Ser-Thr 2e-47 CL0016