Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1901 ATGAGTCGTTTAGGGTTCAAATGTGCGATCTATCATGGGGAATTGTTATTGGGGAAATTAGATGTTATCCCAGGGTCGGACCAGAATTTCCAGTTCCCAAACGAGATTCGAATCCGCCACATATCGCCGAGGAGTGAGCGATGTCTTCCTCTTTCAATTCTCCAAACGATCTCTGCGTTCTCAGTTCGATGCAAGCTCGAGTCCTCACAACCTGTTGAGCAATCCCATTTGATCAATCTTCATGCCTCTTGCTTCCATGAATTGAAGACGGCGGTGGCAGTACTTGGGGATGAAGAAATTCACTTGGTGGCTATGCCTAGTAAGAGAAAGAAGTTTCCATGCTTCTGGTGCTACTCAGTTCCTGTGGGTCTATACAATGCATGCTTAGGGATGCTAAATCTGAGGTGCCTTGCGATCGTGTTTGATTTGGATGAGACACTTATCGTTGCAAACACCATGAAGTCGTTTGAAGATAGAATTGAGGCTCTGCGAGGTTGGCTTGCTCGTGAGACTGATCCACTACGGGTGTCAGGGATGTCTGCTGAACTTAAACGTTACATGGATGACCGAATGCTGCTGAAGCAGTACGCAGATAGTGATTGCGTCGTCGATAATGGAAAGATGTTCAAGGTTCAACTGGAGGAGGTCCCTCCATTGTCTGATAGCCAGGAGAAAGTTGTTCGTCCTGTTATTAGATTGCAAGATAGGAATATAGTCCTTACTCGCATCAATCCTGAGATTCGGGATACCAGTGTGCTTGTGAGGTTACGACCTGCTTGGGAGGATTTAAAATACTATTTAACTGCAAAAGGGCGCAAACGGTTTGAAGTATATGTTTGTACTATGGCTGAAAAGGATTATGCCTTGGAAATGTGGAGGCTTCTTGACCCTGAGGCACATCTTATAAATTCAAAGCAACTCCATGACCGGATGTTTGCAGGATCCAGAAAATCTTTATTAAATGTCTTCCAGGGTGGCCTATGCCATCCAAAAATGGCAATGGTGATTGATGACCGGTCAAAGGTTTGGGAAGACAAGGACCAGCCCAGGGTTCATGTGGTTCCTGCCTTTACTCCTTATTATGCTCCTCAGGCAGAGACAGCCAATGCTGTTCCAGTCCTATGCGTAGCAAGAAATGTTGCATGCAATGTTAGAGGCTGTTTCTTTAAAGAATTTGATGAGAATTTATTACAAAGAATTTCGGAAGTCTTCTACGAAGATGACATTGCAACCTTACCTCACCCTCCAGATGTGAGCAACTACATGATGTCTGAGGATGCTGGTTTTGTGCCAAACAATAATAGTAATGCCCTAATTAGTGAAGGACTTTATGGTGCAGAAGTTGAACGCAGGTTAAACCAATCTGATGAGAAGCCTTCTATTGACTCAGTCACAAGATCTATGGCAAACAAAGTTGAGTTCAAACCTGAAACCTCTCAGCCAACTGCTGGTGTTATTTCAAATATCATTTCCCCTGGATCTTCAAGAACCCTAATGGCTTCTCCGAAACCTGGCTTGCTTGGACCTCCAATCAGGCATGATGGGAGCTATGTTGGTCGTGATTATGATATGAAAAGAGAACTATTGACCATGAGGCATGGTGTGGATATAAAAAGTCAAGGCTCAGGTGAACCCCTGATCATATCAAAGCCACTCAATCATGCGTTGCCATCATTAATGCAGCTACATGGAGGATGGTTGGTGGAAGGTGATATAAGCAGCAGAGCTCAACCAACTAATTGGCCTTTTGTATCTGTTAAAGAATCTAATGTAGTAAAGTCCGAAAAGCATCAGGCTCAACCAAAGCCTCATAGTATGCCAGTTTCTACTCCCACTGGTTTGCTCTCACAACCATCACAAGTGAAGATTGAAGAGGCAAGTTCTGTACGTGATTTACAGAGGCAAAATCTTCCATCTCTGTGTCAGCCAGCAGAGGATGGTGCTTGTCAGAATCATGTATCTTCTAATGGCAGAGAAATTCAAAGTGAATCTGGAAAGTTAAATTTGTTACCTTCTCTATCTGTTGATGTGCTGGAAGAAATTGGAAGGCGGTGTAGTTGTAAGGTTGAATTTAAGACCATTATAAGCTCCAGCAAGGACTTGCAGTTTTCAGTGGAGGTAATATTCACTGGTGAGACAATAGGCGTTGGAATGGGCAGGACAAGGAAAGATGCTCAACACCAAGCTGCTGATAACGCTCTTCACAAATTAGCAGTGGATTTAGGTGATCTGTTAACAGAATCTGTACGAGCTCAAAAAATTGATAGTGCTTACATGGTTTTGCTTCAAATTGGTCTATGGGGGACATGTGGGATGAGCTGCAGATTGAGAAGGTTTAACTATCTGAGGCCAGACCTCATCAAAGAACGCTTTGCAGAAAAGAAAGATCATAAACTTATAAAACTACATTCACGTTATGGCAAACAGGCAATGCTGATACTAGTTACAAATGTGTCCTGTGGTCATAGTTCATACATGATTGCTTCTCTCCGATTTGCACATGAAACTGCCTGA 2514 0.4324 MSRLGFKCAIYHGELLLGKLDVIPGSDQNFQFPNEIRIRHISPRSERCLPLSILQTISAFSVRCKLESSQPVEQSHLINLHASCFHELKTAVAVLGDEEIHLVAMPSKRKKFPCFWCYSVPVGLYNACLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRGWLARETDPLRVSGMSAELKRYMDDRMLLKQYADSDCVVDNGKMFKVQLEEVPPLSDSQEKVVRPVIRLQDRNIVLTRINPEIRDTSVLVRLRPAWEDLKYYLTAKGRKRFEVYVCTMAEKDYALEMWRLLDPEAHLINSKQLHDRMFAGSRKSLLNVFQGGLCHPKMAMVIDDRSKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLQRISEVFYEDDIATLPHPPDVSNYMMSEDAGFVPNNNSNALISEGLYGAEVERRLNQSDEKPSIDSVTRSMANKVEFKPETSQPTAGVISNIISPGSSRTLMASPKPGLLGPPIRHDGSYVGRDYDMKRELLTMRHGVDIKSQGSGEPLIISKPLNHALPSLMQLHGGWLVEGDISSRAQPTNWPFVSVKESNVVKSEKHQAQPKPHSMPVSTPTGLLSQPSQVKIEEASSVRDLQRQNLPSLCQPAEDGACQNHVSSNGREIQSESGKLNLLPSLSVDVLEEIGRRCSCKVEFKTIISSSKDLQFSVEVIFTGETIGVGMGRTRKDAQHQAADNALHKLAVDLGDLLTESVRAQKIDSAYMVLLQIGLWGTCGMSCRLRRFNYLRPDLIKERFAEKKDHKLIKLHSRYGKQAMLILVTNVSCGHSSYMIASLRFAHETA 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1901 837 SMART forpap2 191 364 IPR004274 -
Glsi06g1901 837 ProSiteProfiles FCP1 homology domain profile. 132 377 IPR004274 -
Glsi06g1901 837 MobiDBLite consensus disorder prediction 596 615 - -
Glsi06g1901 837 SMART DRBM_3 674 738 IPR014720 -
Glsi06g1901 837 Pfam Double-stranded RNA binding motif 697 737 IPR014720 -
Glsi06g1901 837 SUPERFAMILY HAD-like 127 380 IPR036412 -
Glsi06g1901 837 FunFam RNA polymerase II C-terminal domain phosphatase-like 2 670 741 - -
Glsi06g1901 837 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 673 739 IPR014720 -
Glsi06g1901 837 SUPERFAMILY dsRNA-binding domain-like 676 737 - -
Glsi06g1901 837 FunFam RNA polymerase II C-terminal domain phosphatase-like 1 200 385 - -
Glsi06g1901 837 Gene3D - 128 408 IPR023214 -
Glsi06g1901 837 PANTHER RNA POLYMERASE II CTD PHOSPHATASE 32 467 IPR039189 GO:0008420
Glsi06g1901 837 Pfam NLI interacting factor-like phosphatase 248 355 IPR004274 -
Glsi06g1901 837 Gene3D - 674 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1901 Glsi-ChrGlsi06 66197270 66208772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1901 770 813 MYB Transcription Factor Family AT4G09460 54.545 3.11e-08 53.5