Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1898 ATGTCCCTAGCAATACAAATCCTTAGTGTATTGCTTCTTCTGTACTCTGATGCAGCAACCCCGCCAGGCAATGAAACTGATTTTCATGCCTTACTTGACTTTAAGAGTCGGATAGTTCAAGATCCATTCAAAATAATGAATTTGTGGAACGATTCCACCCATCACTGCAGCTGGCATCTAAACATCAGCTATAATAACTTTGCTGGGAGTATTCCAAGCAATCTAAGTCACTGTAAAGACCTGAGAATATTATCTGCAGGTCATAACAATTTTACAGGAGCAATTCCAACTTGGATAGGGAATTTTTCTGCTTTATCTCTTCTCAACTTGGCCGTGAACAATTTGCATGGAAGCATACCAAATGAGGTAGGCCATTTATCAGGCTTGACACTTCTTGGACTAAATGGGAATTACCTATCTGGTAAAATTCCTTCGTCAATTTATAACATTTCTTCCTTGTTCTTTTTCCATGTTTCTCAAAACCACCTGCACGGTAATTTACCAGCTGATGTTGGCTTTACTCTTCCTAACCTTCAAGTATTTGCTGGTTCAGTCAACAATTTCACAGGAACTGTTCCTGCATCATTGTTAAATGCTTCAAGGCTACGAATTCTTGACTTTGCTAATAATAGTCTCACTGGAACACTGCCAAAGAACATAGGAATTTTGAACAGTTTAACTAGACTTAACTTTGATGACAATAGACTTGGAACTAGAAAATCTGACGGTTTAAACTTTCTTGCTTCCTTGGTTAACTGCACTGATCTAGAAGTTTTAGGTCTTGCAGGAAACAATTTTGGTGGAGAATTGCCCAGCCTAATTGCTAACTTATCTAGCCAATTAAAAATATTAACCTTGGGTTCCAATGCATTATATGGAAGCATCCCTGTTGGAATTGGAAAACTTGCTAACTTGGCCCTTCTTGGATTGGAAGACAACCTTCTAAGTGGTAGTGTCCCTGATGAAATAGGCGAGCTCCAAAATTTGGAAGGTTTGGATTTGAAGATCAACAACTTTTCTGGAACAATCCCTTCCTCTCTGGGAAACTTAACTTCATTAACAAGCCTCTACATGGAGGAAAACAACTTTGAGGGGAGTATACCTTCAAGTCTTGGAAAATGTCAGAATTTGTTAGTGTTGAGTCTTTATATTAACAAGCTCAATGGCACCATACCAAAGCAAGTGATTGGCCTTTCTTCACTTGTAGTGTTGGATGTCTCTTATAATGTTCTGACAGGGTCCTTACCTGATGAAGTGGGCAATTTAGATCATCTAGCAAAATTGGTACTCTCGGAGAACAAATTGTCTGGTGTTATTCCGTCTTCTCTTGGCAAATGTGTCAGCTTGGAACAATTGTATTTGCAGGGCGAAGTACCAACGGAAGGAATCTTCAAAAATGCAAGTTACGTTACAATATATGGAAACAGCAAGCTCTGCGGTGGTGTCCCAGAACTAAATTTACCTGCATGCACTATCCAAAAAGCCTCTTCGTCCAAAAAGTTTCTTGCCCCCAAGGTGGTTATCCCTGTTGCTTGTACACTTGTAGTTGTAATCCTTCTATCATGCTTTCTTGCATCCTTTTTCAAGGTAAAGAGAGCCAGAAAGAGAGCAGCAAGAGCAATCAATACAAATGATTTGAATTTGGAATTTTCTTACTCAGAACTAGCTAGATGCACTGACGGGTTCTCCCGAGATAACTTAATCGGCTCAGGAAGTTTTGGTTCTGTATACAAAGGAACTCTTGCAGCCCATGTTGGGGACTTCGGATTAGCAACCCTTCTATATGAAGAATCAAGCCGATCTTCTGGTTCCAAACAATCAACTGTATCGGCATCCCTAAAGGGTTCTATTGGGTACATTCCACCAGAGTATGGCACGGGTGCTCAACCTTCAACTCATGGAGATGTCTACAGCTATGGGATACTGTTACTGGAAATTTTCACTGGAAAAAGACCAACAGATGAGGCATTTGAAGATGGGATGGGAATTCACCAGTTTGCAGCAATGGCTTTACCTAATCATGCCATGGATATAGTTGACCCTTCACTGCTATCTGAAGAAGAATTTGATGATGATGGAGATCAAGATATTTACTCACAGGAGAGAGCAATAAGCAAGGGCAAAAGACGTGAAATCCAAGCAAGACATACAATGGAGCATTGCTTGGCTTCGTTGATGCAAATCGGAGTCTCATGCTCTGATACTTCGCCCACGGAGCGGCTGCCTATGACCCTGGTTGTCAACAAACTGCAAGCAATCAAGAGCGTGTACATGAGAAAGTAA 2283 0.4069 MSLAIQILSVLLLLYSDAATPPGNETDFHALLDFKSRIVQDPFKIMNLWNDSTHHCSWHLNISYNNFAGSIPSNLSHCKDLRILSAGHNNFTGAIPTWIGNFSALSLLNLAVNNLHGSIPNEVGHLSGLTLLGLNGNYLSGKIPSSIYNISSLFFFHVSQNHLHGNLPADVGFTLPNLQVFAGSVNNFTGTVPASLLNASRLRILDFANNSLTGTLPKNIGILNSLTRLNFDDNRLGTRKSDGLNFLASLVNCTDLEVLGLAGNNFGGELPSLIANLSSQLKILTLGSNALYGSIPVGIGKLANLALLGLEDNLLSGSVPDEIGELQNLEGLDLKINNFSGTIPSSLGNLTSLTSLYMEENNFEGSIPSSLGKCQNLLVLSLYINKLNGTIPKQVIGLSSLVVLDVSYNVLTGSLPDEVGNLDHLAKLVLSENKLSGVIPSSLGKCVSLEQLYLQGEVPTEGIFKNASYVTIYGNSKLCGGVPELNLPACTIQKASSSKKFLAPKVVIPVACTLVVVILLSCFLASFFKVKRARKRAARAINTNDLNLEFSYSELARCTDGFSRDNLIGSGSFGSVYKGTLAAHVGDFGLATLLYEESSRSSGSKQSTVSASLKGSIGYIPPEYGTGAQPSTHGDVYSYGILLLEIFTGKRPTDEAFEDGMGIHQFAAMALPNHAMDIVDPSLLSEEEFDDDGDQDIYSQERAISKGKRREIQARHTMEHCLASLMQIGVSCSDTSPTERLPMTLVVNKLQAIKSVYMRK 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1898 760 Gene3D Transferase(Phosphotransferase) domain 1 571 759 - -
Glsi06g1898 760 Gene3D Ribonuclease Inhibitor 173 272 IPR032675 -
Glsi06g1898 760 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 52 250 - -
Glsi06g1898 760 Pfam Protein tyrosine and serine/threonine kinase 584 748 IPR001245 GO:0004672|GO:0006468
Glsi06g1898 760 SUPERFAMILY L domain-like 24 248 - -
Glsi06g1898 760 Gene3D Ribonuclease Inhibitor 273 367 IPR032675 -
Glsi06g1898 760 Pfam Leucine rich repeat N-terminal domain 25 58 IPR013210 -
Glsi06g1898 760 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 251 455 - -
Glsi06g1898 760 Gene3D Ribonuclease Inhibitor 24 172 IPR032675 -
Glsi06g1898 760 Gene3D Ribonuclease Inhibitor 368 487 IPR032675 -
Glsi06g1898 760 SUPERFAMILY Protein kinase-like (PK-like) 550 748 IPR011009 -
Glsi06g1898 760 SUPERFAMILY RNI-like 174 475 - -
Glsi06g1898 760 PANTHER UNNAMED PRODUCT 60 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1898 Glsi-ChrGlsi06 66186826 66190014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1898 581 759 Receptor kinase-like Gene Family AT3G47570 37.989 5.21e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi06g1898 PK_Tyr_Ser-Thr 1.3e-08 CL0016