Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1897 ATGTTGAGCTTAAATTACTTTGGCGGGAGTATTCCAAGTAATCTAAGCCATTGTAAGGATTTGAGAAGATTATCTCTAGGTCCTAACAACCTTACAGGAACAATTCCAACTTGGATAGGGAATTTTTCTGCTCTATCTCTTCTCAACCTTGGTGTGAACAATTTGCATGGAAGCATACCAAATGAGGTAGGCCATTTATCAGGATTGACATTTCTTGGACTAAATGAGAATTACTTATCTGGTGCAATTCCTTTTTCAATTTATAACTTATCTTCCTTATTCTATTTCACTGTTGCTCTTAACCATCTTCATGGTAATTTACCAGCTAATGTTGGCTTTACTCTTCCTAACCTTGAAATATTTGCCGGCGGAGTCAACAATTTCACGGGAACTATTCCTGCATCATTGTTAAATGCTTCAAGGCTACAAATTCTTGACTTTGCTGATAATGGTCTCACTGGAACACTGCCAAAGAACATAGGAATTTTGAACAGTTTAACTAGACTTAACTTTGATGACAATAGACTTGGAATTGGGAAATCTGGCGGTCTAAACTTTCTTGCTTCCTTGGTTAACTGCACTGATCTAGAAGTTTTAGGTCTTGCAAGAAATAATTTTGGTGGAGAATTGCCCAGCGTTATTGCTAATTTATCTAGCCGATTAAAAAGATTAACCTTAGGTTCCAATGCATTATATGGAAGCATCCCTGTTGGAATTAGCAAACTTGCTAACTTGGCCCTTCTTGGATTGGAAGGTAACCTTCTAAGTGGTAGTGTCCCTGATGAAATAGGCATGCTCCAAAATTTGGAAGATATGTATTTGAATGTTAACAACTTTTCTGGAACAATCCCTTCCTCTCTGGGAAACTTAACTTCGTTAACAAGCCTCTACATGGAGGAGAACAACTTTGAGGGGAGAATACCTTCAAGTCTTGGAAAATGTCAAAATTTGTTAGTGTTGAGTCTTTACATCAACAAGCTCAATGGCACCATACCAAAGCAAGTGATTGGCCTTTCTTCACTTGCAGTGTACTTGGATGTCTCTTATAATGTTCTTACAGGGTCCTTACCTGATGAAGTGGGCAATTTAGATCATCTAACAAAGCTGGTACTCTCAGAGAACAAATTGTCTGGCGTTATTCCATCTTCTCTTGGCAAATGTGTCAGCTTGGAGATACTGCAAATGCAGGGTAACTTGTTAGAGGGAGAGATTCCTCAAACTTTAGAAAATTTGAGAGGTTTACAAGATATAGATCTTTCACGCAATAACTTGTCTGGGACGATTCCTAAATTCCTCAGTGGGTTTTCATCTCTCAAACATCTCAATCTTTCATACAATGACCTTGAGGGTGAAGTACCAAAGGCAGGGATCTTCAAAAATGTAAGTTCCATTTCAATATATGGAAACAGCAAACTCTGCGGTGGCGTCCCAGAACTAAATTTACCTGCATGTGCTACCAAAAAAGCCTCTTCGTCCAAAAAGTTTCTTGTCCCCAAGGTGGTTATCCCTGTTGCTACCCACGTTGGGGACTTCGGATTAGCAACCCTTCTATATGAAGAATCAAGCCGGTCTTCCAGTTCCAGACAATCAACTATTTCAGCAGGCCTAAAGGGTTCTATTGGGTACATTCCACCAGAGTATGGCACGGGTGCTCAACCTTCAACTCATGGAGATGTCTACAGCTATGGGATACTGTTACTGGAAATTTTCACTGGAAAAAGACCAACAGATGAGGCATTTGAGGATGGGATTGGAATTCACCAGTTTGCAGCAATGGCTTTACCTAATCATGCCATGGATATAGTTGATCCTTCACTGCTATCTGAAGAAGAATTTGATGATGATGAAGATAAAGAAATCTACCCAGAGGAGAAAGCAATAGGGAAGGGCAAACGACGTGAAATCCAAGCAAGAAATACAATGGAGGATTGCTTGGGTTCGTTGATGCAAATCGGAGTCTCATGCTCTGATACTTCGCCCACGGAGCGGCTGCCTATGACTGTGGTTGTCAACAAACTGCAAGCAATCAAGAGCGCGTACATGAGAAAGTAA 2052 0.403 MLSLNYFGGSIPSNLSHCKDLRRLSLGPNNLTGTIPTWIGNFSALSLLNLGVNNLHGSIPNEVGHLSGLTFLGLNENYLSGAIPFSIYNLSSLFYFTVALNHLHGNLPANVGFTLPNLEIFAGGVNNFTGTIPASLLNASRLQILDFADNGLTGTLPKNIGILNSLTRLNFDDNRLGIGKSGGLNFLASLVNCTDLEVLGLARNNFGGELPSVIANLSSRLKRLTLGSNALYGSIPVGISKLANLALLGLEGNLLSGSVPDEIGMLQNLEDMYLNVNNFSGTIPSSLGNLTSLTSLYMEENNFEGRIPSSLGKCQNLLVLSLYINKLNGTIPKQVIGLSSLAVYLDVSYNVLTGSLPDEVGNLDHLTKLVLSENKLSGVIPSSLGKCVSLEILQMQGNLLEGEIPQTLENLRGLQDIDLSRNNLSGTIPKFLSGFSSLKHLNLSYNDLEGEVPKAGIFKNVSSISIYGNSKLCGGVPELNLPACATKKASSSKKFLVPKVVIPVATHVGDFGLATLLYEESSRSSSSRQSTISAGLKGSIGYIPPEYGTGAQPSTHGDVYSYGILLLEIFTGKRPTDEAFEDGIGIHQFAAMALPNHAMDIVDPSLLSEEEFDDDEDKEIYPEEKAIGKGKRREIQARNTMEDCLGSLMQIGVSCSDTSPTERLPMTVVVNKLQAIKSAYMRK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1897 683 SUPERFAMILY L domain-like 219 474 - -
Glsi06g1897 683 SMART LRR_typ_2 242 266 IPR003591 -
Glsi06g1897 683 SMART LRR_typ_2 411 434 IPR003591 -
Glsi06g1897 683 SMART LRR_typ_2 363 387 IPR003591 -
Glsi06g1897 683 SMART LRR_typ_2 290 314 IPR003591 -
Glsi06g1897 683 SMART LRR_typ_2 435 460 IPR003591 -
Glsi06g1897 683 Pfam Leucine rich repeat 21 79 IPR001611 GO:0005515
Glsi06g1897 683 Pfam Leucine rich repeat 405 448 IPR001611 GO:0005515
Glsi06g1897 683 Pfam Leucine rich repeat 345 400 IPR001611 GO:0005515
Glsi06g1897 683 Gene3D Transferase(Phosphotransferase) domain 1 496 683 - -
Glsi06g1897 683 SUPERFAMILY RNI-like 2 280 - -
Glsi06g1897 683 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 506 675 - -
Glsi06g1897 683 SUPERFAMILY Protein kinase-like (PK-like) 507 677 IPR011009 -
Glsi06g1897 683 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 182 - -
Glsi06g1897 683 Pfam Protein tyrosine and serine/threonine kinase 506 578 IPR001245 GO:0004672|GO:0006468
Glsi06g1897 683 FunFam LRR receptor-like serine/threonine-protein kinase EFR 183 490 - -
Glsi06g1897 683 Gene3D Ribonuclease Inhibitor 1 179 IPR032675 -
Glsi06g1897 683 Gene3D Ribonuclease Inhibitor 180 493 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1897 Glsi-ChrGlsi06 66179901 66182729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1897 504 682 Receptor kinase-like Gene Family AT3G47570 38.547 1.50e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi06g1897 PK_Tyr_Ser-Thr 4.7e-08 CL0016