Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1896 ATGTCCCTGGCAATACAAATCCTTACTGTATTGCTTCTTCTGTACTCTGCAACAGCAACCTCGCCAGGAAATGAAACTGATTTTCATGCTTTACTTGACTTTAAGAGTCGGATAGTTCAAGATCCATTCAAAATAATGAGTTTGTGGAACGATTCCACCCATCATTGCAACTGGATAGGAATTACCTGCAACATCTCCAATGGAAGGGTGGCGCAATTGAACCTTATAGGACAGCGATTGGCTGGCACTCTTCCCCCTTCTTTAGGAAATCTCACATTCCTCAGCGTACTCAACCTAAGTAATAATACCTTCCACGGTGAAATTCCTCATGAAGTAGGACATCTACTATACCTGCAACATCTAATGTTGAGCTTAAATTACTTTGGTGGGAGTATTCCAAGTAATCTGAGCCATTGTAAGGATATGAGAAGATTATCTCTAGGTCCCAACAACCTTACAGGAACAATTCCAACTTGGATAGGGAATTTTTCTGCTCTATCTCTTCTCAACCTTGGTGTGAACAATTTACAAGGAAGCATACCAAATGAGGTGGGCCATTTATCAGGATTGACATTTCTTGGACTTAATGGGAATAACCTATCTGGTACAATTCCTTCTTCAATTTATAACATATCTTCCTTATTCTATTTCACTGTTGCTCTAAATCATCTTCATGGTAATTTACCAGCAAATGTTGGCTTTACTCTTCCTAACCTTGAAATATTTGCCGGCGGAGTCAACAATTTCACGGGAACTATTCCTGCATCATTGTTAAATGCTTCAAGGCTACAAATTCTTGACTTTGCTGATAATGGTCTCACTGGAACACTGCCAAAGAACATAGGAATCTTGAACAGTTTCACTAGACTTAACTTTGATGACAATAGACTTGGAATTGGGAAATCTGGCGGTCTAAACTTTCTTGCTTCCTTGATTAACTGCACTGATCTAGAAGTTTTAGGTTCCAATGCATTATATGGAAGCATCCCTGTTGGAATTGGCAAACTTGCTAACTTGGCCCTTCTTGGATTGGAAGGAAACCTTCTAAGTGGTAGTGTCCCTGATGAAATAGGCTTGCTCCAAAACTTGGAAGGTTTGCATTTGAATTTTAACAACATTTCTGGAACAATCCCTTCCTCTTTGGGAAACTTAACTTCGTTAACAAGGCTCTACATGGAGGAGAACACCTTTGAGGGGAGTATACCTTCAAGTCTTGGAAAATGTCAGAATTTGTTAGTGTTGAGTCTTTACATTAACAAGCTCAATGGCCCCATACCAAAGCAAGTGATTGGCCTTTCTTCACTTGCAGTGTACTTGGATGTCTCTTATAATGTTCTGACAGGGTCCATACCTGATGAAGTGGGCAATTTAGATCATCTAGCGAAATTGGTACTCTCAGAGAACAAATTGTCTGGTGTTATTCCATCTTCTCTTGGCAAATCTGTCAGCTTGGAACAACTGCATTTGCAGGGCAACTTGTTAGAAGGAAAGATTCCTCATACTTTAGAGAATTTGAGAGGTTTACAAGACATAGATCTTTCACGCAATAACTTGTCTGGGAAGATTCCTAAATTCCTCAGTGGATTTGCATTTCTCAAGCATCTCAATCTTTCATACAATGACCTTGAGGGTGAAGTACCAAAGGTAGGGATCTTCAAAAATGTAAGTTCCATTTCAATATATGGAAACAGCGAGCTCTGTGGTGGTGTCCCAGAACTAAATTTACCTGCATGCACTATCCAAAAAGCCTCTTCGTCCAGAAAGTTTCTTGCCCCCAAGGTGGTAATCCCTGTTGCTTGTACATTTTTATTTGTAATCCTTCTATCATGCTTTCTTGCATCCTTTTCCAAGGTAAAAATGGCCAGAAAGAGAGCAGCAAGAGCAATCACTACAAACCATTTGAATTTGGAATTTTCTTACTCAGAACTAGCTAGATGCACTGACGGGTTCTCCCGAGATAACTTAATCGACTCAGGAAGTTTTGGTTCTGTATACAAAGGAACTCTTGCAGCCCATGTTGGGGACTTCGGATTGGCAACCCTTCTATATGAAGAATCAACCCAGTCTTCTAATTCCAAACAATCAACTATATCAACAGGCCTAAAGGGTTCTATTGGGTACATTCCACCAGAGTATGGCATGGGTGCTCAACCTTCTACACATGGAGATATCTACAGCTATGGGATACTATTACTGGAAATTTTCACTGGGAAAAGTCCAACAGATGAAGCATTTGAAGATGGGATGGGAATTCACCAGTTTGCAGCAATGGCTTTACCTAATCATGCCATGGATATAGTTGATCCTTCACTGCTGGCCGAAGAAGAATCTGATGATGATGATGAAGATCGAGAAATTTACCCAGAGGAGAGAGCAGTAAGGAAGGGCAAACGACGTGAAATCCAAGAAAGACATACAATGAAGGATTGCTTGGCTTCGTTGATGCAAATCGGAGTCTCATGCTCTGATACTTCGCCCACGGAGCGGCTGCCTATGACTGTGGTTGTCAACAAATTGCAAGCAATCAAGAGCGTGTACATGAGAAAACTAGTTGAAGAGGCTGAGGAAGATGAAGACGATGCTGATGAAGCTGAAGATGACTTTGATTCTGAATCAAAGACGGAAGCTAGCGAAGACAGTGCTGCATCCAAGACAGACGATACACAACGTAGGTTTTTCATGCACATAATGCCCCTTGAAACGTGCTTCACAGCTGACGGGACAATCTTTTAA 2733 0.4098 MSLAIQILTVLLLLYSATATSPGNETDFHALLDFKSRIVQDPFKIMSLWNDSTHHCNWIGITCNISNGRVAQLNLIGQRLAGTLPPSLGNLTFLSVLNLSNNTFHGEIPHEVGHLLYLQHLMLSLNYFGGSIPSNLSHCKDMRRLSLGPNNLTGTIPTWIGNFSALSLLNLGVNNLQGSIPNEVGHLSGLTFLGLNGNNLSGTIPSSIYNISSLFYFTVALNHLHGNLPANVGFTLPNLEIFAGGVNNFTGTIPASLLNASRLQILDFADNGLTGTLPKNIGILNSFTRLNFDDNRLGIGKSGGLNFLASLINCTDLEVLGSNALYGSIPVGIGKLANLALLGLEGNLLSGSVPDEIGLLQNLEGLHLNFNNISGTIPSSLGNLTSLTRLYMEENTFEGSIPSSLGKCQNLLVLSLYINKLNGPIPKQVIGLSSLAVYLDVSYNVLTGSIPDEVGNLDHLAKLVLSENKLSGVIPSSLGKSVSLEQLHLQGNLLEGKIPHTLENLRGLQDIDLSRNNLSGKIPKFLSGFAFLKHLNLSYNDLEGEVPKVGIFKNVSSISIYGNSELCGGVPELNLPACTIQKASSSRKFLAPKVVIPVACTFLFVILLSCFLASFSKVKMARKRAARAITTNHLNLEFSYSELARCTDGFSRDNLIDSGSFGSVYKGTLAAHVGDFGLATLLYEESTQSSNSKQSTISTGLKGSIGYIPPEYGMGAQPSTHGDIYSYGILLLEIFTGKSPTDEAFEDGMGIHQFAAMALPNHAMDIVDPSLLAEEESDDDDEDREIYPEERAVRKGKRREIQERHTMKDCLASLMQIGVSCSDTSPTERLPMTVVVNKLQAIKSVYMRKLVEEAEEDEDDADEAEDDFDSESKTEASEDSAASKTDDTQRRFFMHIMPLETCFTADGTIF 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1896 910 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 670 841 - -
Glsi06g1896 910 Gene3D Ribonuclease Inhibitor 305 580 IPR032675 -
Glsi06g1896 910 Gene3D Ribonuclease Inhibitor 24 178 IPR032675 -
Glsi06g1896 910 SUPERFAMILY L domain-like 320 568 - -
Glsi06g1896 910 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 183 277 - -
Glsi06g1896 910 FunFam LRR receptor-like serine/threonine-protein kinase EFR 305 584 - -
Glsi06g1896 910 ProSiteProfiles Protein kinase domain profile. 484 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1896 910 SUPERFAMILY Protein kinase-like (PK-like) 671 839 IPR011009 -
Glsi06g1896 910 MobiDBLite consensus disorder prediction 774 800 - -
Glsi06g1896 910 FunFam Leucine-rich repeat receptor-like protein kinase 24 182 - -
Glsi06g1896 910 Coils Coil 847 874 - -
Glsi06g1896 910 SUPERFAMILY L domain-like 24 299 - -
Glsi06g1896 910 MobiDBLite consensus disorder prediction 853 887 - -
Glsi06g1896 910 Pfam Leucine rich repeat 438 494 IPR001611 GO:0005515
Glsi06g1896 910 Pfam Leucine rich repeat 143 200 IPR001611 GO:0005515
Glsi06g1896 910 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Glsi06g1896 910 SMART LRR_typ_2 457 480 IPR003591 -
Glsi06g1896 910 SMART LRR_typ_2 505 533 IPR003591 -
Glsi06g1896 910 SMART LRR_typ_2 187 211 IPR003591 -
Glsi06g1896 910 SMART LRR_typ_2 91 115 IPR003591 -
Glsi06g1896 910 SMART LRR_typ_2 360 384 IPR003591 -
Glsi06g1896 910 MobiDBLite consensus disorder prediction 853 873 - -
Glsi06g1896 910 Gene3D Transferase(Phosphotransferase) domain 1 655 868 - -
Glsi06g1896 910 Pfam Protein tyrosine and serine/threonine kinase 671 783 IPR001245 GO:0004672|GO:0006468
Glsi06g1896 910 Gene3D Ribonuclease Inhibitor 240 304 IPR032675 -
Glsi06g1896 910 Gene3D Ribonuclease Inhibitor 179 239 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1896 Glsi-ChrGlsi06 66154816 66161804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1896 669 874 Receptor kinase-like Gene Family AT5G20480 32.692 1.20e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi06g1896 PK_Tyr_Ser-Thr 2.5e-08 CL0016