LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g1894	ATGAGCCATTATTGTGTAAACTCCAAGAACCTGGCAATACAAATCCTTAGTGTATTGCTTCTTTCGTACTCTGCAACAGCAACCCTGCCAGGAAATGAAACTGATCTTCAGGCTTTGCTTGACTTTAAGATTCGGATAGCTCAAGATCCATTCAAAATAATGAGTCATAACAATTTTACAGGAACAATCCCAAATTGGATAGGGAATTTTTCTGCTTTATCTCTTCTCAACTTTGCCGTGAACAATTTGCATGGAACCATACCAAATGAGGTAGGCCATTTGTTAGGCTTGACACTTCTTGGACTAAATGGGAATTACCTTTCTGGTACAATTCCTTCTTCAATTTATAACAGTTCTTCCTTGTTCTTTTTCACTGTTTCTCAAAACCATCTGCATGGTAATTTACCAGCTGATGTTGGCTTAACTCTTCCTAAACTTGAAGTATTTGCTGGCGGAGTCAACAATTTCACAGGAGCTGTCCCTGCATCATTGTTAAATGCTTCAAGGCTACAGATTCTTGACTTTGCTGATAATGGTCTCACTGGAACACTGCCAAAGGACATAGGAATCTTGAACAGTTTAACTAGACTTAACTTTGATCAAAATAGACTTGGGACTGGGAAATCTGGAGGTCTAGACTTTCTTGCTTCCCTGGTTAACTGCACTGATCTAGAAGTTTTAGGTCTTAGTAGAAATATTTTTGGAGGAGAATTGCCAAGCGTAATTGCTAACTTATCTAGCCAATTAAGAATATTAACCTTAGGTGTCAACGGATTATATGGAAGCATCCCTGTTGGAATTGGCAAACTCACTAACTTGGCCCTCCTGGGATTGGAAGAAAACCTTGTAAGTGGTAGAATACCTGAAGTAATAGGAGTGCTCCAAAATTTGAATGGTCTGTCTTTGAATTCTAACAACTTTTCTGGAACAATACCTTCTTCTCTAGGAAACTTAACTTCATTAACAATGCTCAACATGGAGGAGAACAACTTTGAGGGAAATATACCTTCAAGTCTGGGAAAATGTCAGAATTTGTTAGTGCTCAGTCTTTATAGTAACAAGCTCAATGGCAACATACCGAAACAAGTGATTGGCATATCATCACTTGCATTGTCCTTCGACATCTCCCATAATGTTTTGACAGGGTATTTACCGGATGAAGTGGGAAATTTAAATAATCTAGCAAAGCTGGTACTCTCAGAGAACAAATTGTCTGGTGTTATTCCATCTTCGCTTGGCAAATGTGTCAGCTTGGAAATGCTACATTTGCAGAATAACTTGTTAGAAGGAGAGATTCCTCAAACTTTAGAAAATTTGAGAGCCCATGTTGGGGACTTCGGATTAGCAACCCTTCTATGTGAAGAATCAAGCCGGTCTTCTGGTTCCAAACAATCATCTATATCGGCATCCCTAAAGGGTTCTATTGGGTACATTCCACCAGAGTATGGCATGGGTGCGCAGCCTTCTCCTCACGGAGATATCTACAGCTATGGGATACTATTACTGGAGATTTTCACTGGAAAAAGACCAACAGATGAGGAATTTGAATATGGAATGGGAATTCACCAGTTTGCAGCAATGGTTTTACCCAATCATGCCATGGATATAGTTGATCCTTCACTGCTACCCGAAGAAGAATCTGATCAAGAAGAAGAATTTGAAGATGATGAAGATCAAGAAATTTACCCAGAGGAGAGACCAATAAGGAAGGGCAAACCACACAAAATCCAAGCAATGGAGGATTGTTTGGCTTCGTTGATCCAAATCGGAGTCTCGTGCACTGCTAATTCGCCGACCGAGCGGCTGCATATGACTGCGGTTGTCAACAGATTGCAAGCAATAAAGAACTCGTATGCGAGAACATAA	1866	0.4009	MSHYCVNSKNLAIQILSVLLLSYSATATLPGNETDLQALLDFKIRIAQDPFKIMSHNNFTGTIPNWIGNFSALSLLNFAVNNLHGTIPNEVGHLLGLTLLGLNGNYLSGTIPSSIYNSSSLFFFTVSQNHLHGNLPADVGLTLPKLEVFAGGVNNFTGAVPASLLNASRLQILDFADNGLTGTLPKDIGILNSLTRLNFDQNRLGTGKSGGLDFLASLVNCTDLEVLGLSRNIFGGELPSVIANLSSQLRILTLGVNGLYGSIPVGIGKLTNLALLGLEENLVSGRIPEVIGVLQNLNGLSLNSNNFSGTIPSSLGNLTSLTMLNMEENNFEGNIPSSLGKCQNLLVLSLYSNKLNGNIPKQVIGISSLALSFDISHNVLTGYLPDEVGNLNNLAKLVLSENKLSGVIPSSLGKCVSLEMLHLQNNLLEGEIPQTLENLRAHVGDFGLATLLCEESSRSSGSKQSSISASLKGSIGYIPPEYGMGAQPSPHGDIYSYGILLLEIFTGKRPTDEEFEYGMGIHQFAAMVLPNHAMDIVDPSLLPEEESDQEEEFEDDEDQEIYPEERPIRKGKPHKIQAMEDCLASLIQIGVSCTANSPTERLHMTAVVNRLQAIKNSYART	621

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g1894	621	Gene3D	Ribonuclease Inhibitor	289	373	IPR032675	-
	Glsi06g1894	621	Gene3D	Transferase(Phosphotransferase) domain 1	415	621	-	-
	Glsi06g1894	621	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	51	135	-	-
	Glsi06g1894	621	MobiDBLite	consensus disorder prediction	544	561	-	-
	Glsi06g1894	621	Pfam	Protein kinase domain	441	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g1894	621	SUPERFAMILY	L domain-like	17	246	-	-
	Glsi06g1894	621	MobiDBLite	consensus disorder prediction	544	573	-	-
	Glsi06g1894	621	Gene3D	Ribonuclease Inhibitor	210	288	IPR032675	-
	Glsi06g1894	621	ProSiteProfiles	Protein kinase domain profile.	276	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g1894	621	Gene3D	Ribonuclease Inhibitor	50	209	IPR032675	-
	Glsi06g1894	621	SUPERFAMILY	L domain-like	217	439	-	-
	Glsi06g1894	621	FunFam	LRR receptor-like serine/threonine-protein kinase GSO1	217	443	-	-
	Glsi06g1894	621	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	437	604	-	-
	Glsi06g1894	621	SUPERFAMILY	Protein kinase-like (PK-like)	418	609	IPR011009	-
	Glsi06g1894	621	Pfam	Leucine rich repeat	373	428	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g1894	Glsi-ChrGlsi06	66119060	66122281	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g1894	54	621	Receptor kinase-like Gene Family	AT3G47570	28.151	8.52e-45	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Glsi06g1894		Pkinase	3.2e-08	CL0016