Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1890 ATGTACTGTGCTTTGATTCACCCAAACCATTTTCCAAAAATCTTAAAGGGTAACCTGAAAATGGAGGGGAGGGATGAAGATGTGAGGGTAGGAGCCAACAAGTTCAGAGATAGGCAACCAATAGGAACAGCTGCTCAGGCTCAAGATGCCAAAGACTACGAAGAGCCACCTCCAGCACCATTGTTTGATCCTGGGGAGTTATGCTCATGGTCGTTCTACAGAGCAGGCATAGCAGAGTTTGTGGCCACATTCTTGTTTCTTTACATCACTGTTTTGACTGTAATGGGTGTGGCAAGATCTCCCAGCAAGTGTTCCACTGTGGGTGCTCAAGGAGTTGCTTGGGCATTTGGTGGGATGATCTTTGCTCTTGTCTATTGCACTGCTGGGATCTCAGGGGGCCACATTAACCCAGCAGTGACATTTGGGATGTTCTTGGCACGGAAGCTGTCCCTGACCAGGGCAGTGTTCTACATAATTATGCAATGCTTGGGAGCAATTTGTGGTGCTGCTGTGGTCAAGGGATTTCAACCGCACCAGTATGAGAGGCTTGGTGGAGGTGCTAACACTGTCAGTGCAGGATACTCTAAAGGCAGTGGCCTTGGAGCAGAGATTGTAGGCACGTTTCTGCTTGTTTATACTGTTTTCTCTGGTACAGATGCCAAGCGACGTGCTAGAGACTCCCATGTTCCAATCTTGGCACCACTGCCAATTGGGTTTTCTGTGTTTCTGGTGCATTTGGCTACAATTCCAATCACAGGGACAGGCATCAACCCAGCTAGAAGTTTAGGTGCAGCTGTTATCTACAACAAGGACCAAGCTTGGGATGACCATTGGATCTTTTGGGTAGGGCCTTTCATTGGGGCGGCCCTTGCAGCTTTGTACTATCAGATAGTGATAAGGGCTATCCCCTTCAAGTCAAAGTAA 924 0.4816 MYCALIHPNHFPKILKGNLKMEGRDEDVRVGANKFRDRQPIGTAAQAQDAKDYEEPPPAPLFDPGELCSWSFYRAGIAEFVATFLFLYITVLTVMGVARSPSKCSTVGAQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGMFLARKLSLTRAVFYIIMQCLGAICGAAVVKGFQPHQYERLGGGANTVSAGYSKGSGLGAEIVGTFLLVYTVFSGTDAKRRARDSHVPILAPLPIGFSVFLVHLATIPITGTGINPARSLGAAVIYNKDQAWDDHWIFWVGPFIGAALAALYYQIVIRAIPFKSK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1890 307 FunFam Probable aquaporin PIP1-2 59 307 - -
Glsi06g1890 307 Pfam Major intrinsic protein 67 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1890 307 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 33 303 IPR034294 -
Glsi06g1890 307 SUPERFAMILY Aquaporin-like 66 300 IPR023271 -
Glsi06g1890 307 CDD MIP 74 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1890 307 ProSitePatterns MIP family signature. 134 142 IPR022357 -
Glsi06g1890 307 PRINTS Major intrinsic protein family signature 153 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1890 307 PRINTS Major intrinsic protein family signature 116 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1890 307 PRINTS Major intrinsic protein family signature 238 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1890 307 PRINTS Major intrinsic protein family signature 278 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1890 307 PRINTS Major intrinsic protein family signature 202 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1890 307 PRINTS Major intrinsic protein family signature 74 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1890 307 NCBIfam MIP family channel protein 78 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1890 307 Gene3D Glycerol uptake facilitator protein. 59 306 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1890 Glsi-ChrGlsi06 66082326 66085288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1890 21 307 Major Intrinsic Protein MIP AT3G61430 83.972 4.89e-175 484