Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1887 ATGAGAGAAAATCCGAGCTGCTCGAAGATAAGCGACGAGGACACTAGAAGAGTTGTAGGAAAGCTGTCTAGAGGTGCTTTGATTCACCCAAACCATTTTCCAAAAAGCCTAAAGGGTACACTAAAAATGGAGGGGAAGGATGAAGATGTGAGGGTAGGAGCCAACAGGTACAGAGAGAGGCAACCAATAGGAACAGCTGCTCAGGCTCAAGATGCCAAAGACTACAAAGAGCCACCTCCAGCACCATTGTTTGAGCCTGGGGAGTTATCCTCATGGTCGTTCTACAGAGCAGGCATAGCAGAGTTTGTGGCCACATTCTTGTTTCTTTACATCACGGTTTTGACTGTAATGGGTGTGGCTAAATCTCCCGGCAAGTGTTCCACCGTGGGTGTTCAAGGCATTGCTTGGGCATTTGGTGGGATGATCTTTGCTCTTGTCTATTGCACTGCTGGGATCTCAGGGGGCCACATTAACCCAGCAGTGACATTTGGGCTGTTCTTGGCACGGAAGTTGTCCCTGACTAGGGCAGTGTTCTACATAATTATGCAGTGCTTGGGAGCAATCTGTGGTGCTGCTGTGGTCAAGGGATTTCAATCACACCAGTATGAGAGGCTTGGTGGAGGTGCCAACACTGTCAGTGCAGGATACTCTAAAGGCAGTGGCCTTGGAGCAGAGATTGTAGGCACATTTGTGCTTGTTTATACTGTTTTCTCTGCTACAGACGCCAAGCGAAATGCTAGAGACTCCCACGTTCCGATCTTGGCACCACTGCCAATTGGGTTTGCTGTGTTTCTGGTGCATTTGGCTACAATTCCTATCACAGGGACAGGCATAAACCCAGCTAGAAGTTTAGGTGCAGCTCTTATCTACAACAAGGACCAAGCTTGGGATGACCATTGGATCTTTTGGGTAGGGCCTTTCATTGGGGCAGCCCTTGCAGCTTTGTACCATCAGATAGTGATAAGGGCTATCCCCTTCAAGTCAAAGTGA 990 0.4859 MRENPSCSKISDEDTRRVVGKLSRGALIHPNHFPKSLKGTLKMEGKDEDVRVGANRYRERQPIGTAAQAQDAKDYKEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSPGKCSTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAAVVKGFQSHQYERLGGGANTVSAGYSKGSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1887 329 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1887 329 PRINTS Major intrinsic protein family signature 260 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1887 329 PRINTS Major intrinsic protein family signature 224 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1887 329 PRINTS Major intrinsic protein family signature 138 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1887 329 PRINTS Major intrinsic protein family signature 175 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1887 329 PRINTS Major intrinsic protein family signature 300 320 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1887 329 Gene3D Glycerol uptake facilitator protein. 81 328 IPR023271 -
Glsi06g1887 329 Pfam Major intrinsic protein 88 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1887 329 NCBIfam MIP family channel protein 100 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1887 329 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 55 325 IPR034294 -
Glsi06g1887 329 FunFam Probable aquaporin PIP1-2 81 329 - -
Glsi06g1887 329 CDD MIP 96 320 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi06g1887 329 ProSitePatterns MIP family signature. 156 164 IPR022357 -
Glsi06g1887 329 SUPERFAMILY Aquaporin-like 89 322 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1887 Glsi-ChrGlsi06 66021243 66026289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1887 43 329 Major Intrinsic Protein MIP AT3G61430 86.760 4.12e-179 495