Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1884 ATGGAAGCCGAAATTTTTTGGTCTTTTGGATGCTTGAAATGCTACTCTATATGTATGACAAGCAATGGGTCTGACCCTTTGACAATGCTTGCCAATCAAAATGCTATACTGTTAAACTTGATTATGTTTTCGGAAGGGAAGGAAGACAATGATTGTCTTCTTTATGGAAGCGCTAGTGACCAATTGATTTCTAAAGTTGTTATCAGTGTTGAACTTATACATATAAGGCCATGGCCTAGTTTTGGAGTTCCAGCAATATTCATTATTGCAAGGTACACCGGTGAGTTCCCTCGCTACTCTTTTTCTGCTTCCAAGTTGGTTATTGTGGTTGCATTTCCGAGACTCAACGGAGAAAGAGAAAAGGGTTTGAGGAGGCGAACGAGTTTTAGAGAGAGAGAGAAATCTGAGATTTTTGAGATGGACGTGATAAAGTCTCAGCAAATATCATCGAGGCCAATCGAGAAGGTCATAGTGCACCCTCTGGTTCTTCTCAGCATCGTCGATAACTACAATCGGGTCGCCAAGGACACTCGCAAACGGGTCGTCGGAGTCTTGCTCGGTAGTTCCTTTAAGGGCACCGTCGATGTTAGCAACAGCTACGCAGTGCCTTTTGAGGAAGATGACAAGGACCCGAGCATCTGGTTCCTGGACCACAATTACCATGAATCCATGTTTTCTATGTTCAAGAGAATTAATGCCAAGGAGCATGTTGTGGGATGGTACAGTACGGGACCAAAGCTACGTGAGAATGATCTAGATATTCACAGATTATTCCACAACTATGTCCCAAATCCTGTGTTGGTCATCATTGATGTCCAGCCTAAGGAGCTGGGGATACCTACCAAGGCTTATTATGATGTTGAAGAAGTAAAGGAGAATGCTACACAGAAAAGCCAGAAGGTTTTTGTTCATGTGCCTTCAGAAATTGCTGCTCATGAGGTTGAAGAGATTGGAGTTGAACACTTGTTGAGGGATGTTAAAGATACAACCATTAGTACACTTGCAACTGAGGTTTCTGGTAAACTTACAGCATTAAAGGGTTTAGATGCAAGATTAAAAGAGATACGCGGTTACCTTGATCTGGTTATTGATGGAAAGCTTCCATTAAACCATGAGATACTTTACCATCTGCAGGATGTGTTCAACCTCCTTCCAAATCTCAATGTTTCAGATTTAATCAAGGCCTTTGCTGTAAAAACAAATGATATGATGCTGGTCATATATCTTTCTTCTCTCATCCGAAGTGTCATTGCACTTCACAACTTGATAAATAACAAGATGCTGAACAAAGAGCATGAGAAAGCTGAAGATGCAAAGCCAGTTACAGTCCCTCCTGTCAGTAGTAGCTGA 1350 0.417 MEAEIFWSFGCLKCYSICMTSNGSDPLTMLANQNAILLNLIMFSEGKEDNDCLLYGSASDQLISKVVISVELIHIRPWPSFGVPAIFIIARYTGEFPRYSFSASKLVIVVAFPRLNGEREKGLRRRTSFREREKSEIFEMDVIKSQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHRLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRGYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDAKPVTVPPVSSS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1884 449 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 152 432 - -
Glsi06g1884 449 FunFam 26S proteasome non-ATPase regulatory subunit 7 148 333 - -
Glsi06g1884 449 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 154 263 IPR000555 GO:0005515|GO:0008233|GO:0008237
Glsi06g1884 449 ProSiteProfiles MPN domain profile. 156 290 IPR037518 -
Glsi06g1884 449 Pfam Maintenance of mitochondrial structure and function 313 424 IPR024969 -
Glsi06g1884 449 CDD MPN_RPN7_8 154 434 IPR033858 GO:0005838
Glsi06g1884 449 SMART pad1_6 155 289 IPR000555 GO:0005515|GO:0008233|GO:0008237
Glsi06g1884 449 Gene3D Cytidine Deaminase, domain 2 148 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1884 Glsi-ChrGlsi06 65954117 65961436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1884 158 387 Eukaryotic Initiation Factors Gene Family AT2G39990 29.487 3.67e-26 105