Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1877 ATGAAATTCAAAGGTTATTTACCTCGTTACATGGCTCATAAGGGAATTGAAGTTCTCTCTCCAGCCTCCTATCTCCAGAACTCCAACTGGTTGTTCCAGGAAAGCAAGGGTACAAAATGGACTCCCGAAGAGAACAAGCGGTTTGAGAACGCTTTGGCTTTTTATGATAAGGATACTCCAGATCGTTGGGTGAAGGTTGCAGCCATGATTCCTGGGAAGACAGTAGGTGATGTGATTAAACAGTACAGAGAACTGGAAGAAGATGTCAGTGTCATTGAGGCAGGGTTGATCCCAGTTCCTGGATACAGTAGTAGTTCTTTCACGTTGGAGTGGGTCAATAATCAAGGCTTTGACGGTTTCAAGCAATTCTACACTGCTGGAGGGAAAAGGGGCACTTCCACTCGGCCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACGGAAGAGGAGCACAGGCAATTTCTAATGGGTCTGAAGAAGTACGGTAAAGGGGACTGGAGAAACATCTCTCGTAATTTTGTGACCACAAGAACACCCACTCAGGTTGCTAGTCATGCTCAGAAGTATTTCATCAGACAGCTAACAGGAGGCAAGGATAAGAGGAGATCAAGTATCCATGATATCACAATGGTTAATCTCCCAGAAACCAAGTCTCCTTCATCAGACAGTAACAGACCTTCTTCTTCTCCTGATCACTCAGTGAAGGTTGTGGATCCACAGAAAAATCCCAAGTTGTCTGCCATGGTTAAACAGGAATATGACTGGAAATTACCATATGAAGCCATGCCAATGGTTTTCAATTCAACCAATGGGAACATGTTCATGGCACCATTTCGTGGGATTCCTTCGTATGGATCTGGGCCACAGGAGCAGTGTTCACTCAGAGGTTCCCTCGATGGATGTCAGTTTGGATCTTATGATTCTATTTTTCAAATGCAATCGATGCAACAACATCAGTGA 963 0.4465 MKFKGYLPRYMAHKGIEVLSPASYLQNSNWLFQESKGTKWTPEENKRFENALAFYDKDTPDRWVKVAAMIPGKTVGDVIKQYRELEEDVSVIEAGLIPVPGYSSSSFTLEWVNNQGFDGFKQFYTAGGKRGTSTRPSEQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLPETKSPSSDSNRPSSSPDHSVKVVDPQKNPKLSAMVKQEYDWKLPYEAMPMVFNSTNGNMFMAPFRGIPSYGSGPQEQCSLRGSLDGCQFGSYDSIFQMQSMQQHQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1877 320 MobiDBLite consensus disorder prediction 210 236 - -
Glsi06g1877 320 MobiDBLite consensus disorder prediction 134 148 - -
Glsi06g1877 320 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Glsi06g1877 320 MobiDBLite consensus disorder prediction 128 148 - -
Glsi06g1877 320 MobiDBLite consensus disorder prediction 201 244 - -
Glsi06g1877 320 FunFam transcription factor MYB1R1 145 196 - -
Glsi06g1877 320 ProSiteProfiles SANT domain profile. 147 195 IPR017884 -
Glsi06g1877 320 CDD SANT 146 191 IPR001005 -
Glsi06g1877 320 Pfam Myb-like DNA-binding domain 146 191 IPR001005 -
Glsi06g1877 320 Pfam Myb-like DNA-binding domain 39 84 IPR001005 -
Glsi06g1877 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 195 IPR017930 -
Glsi06g1877 320 Gene3D - 32 99 - -
Glsi06g1877 320 ProSiteProfiles Myb-like domain profile. 139 191 IPR001005 -
Glsi06g1877 320 SUPERFAMILY Homeodomain-like 140 194 IPR009057 -
Glsi06g1877 320 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 34 273 IPR043363 -
Glsi06g1877 320 CDD SANT 39 85 IPR001005 -
Glsi06g1877 320 Gene3D - 145 195 - -
Glsi06g1877 320 FunFam Transcription factor SRM1 32 99 - -
Glsi06g1877 320 SMART sant 143 193 IPR001005 -
Glsi06g1877 320 SMART sant 36 88 IPR001005 -
Glsi06g1877 320 NCBIfam myb-like DNA-binding domain, SHAQKYF class 142 194 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1877 Glsi-ChrGlsi06 65840535 65850541 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi06g1877 Myb_DNA-binding 2.5e-12 CL0123