Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1867 ATGATAGTTGCTATGGACTTGAATGCCTCACCGGTTCCGGAGGACGATGAGGAGCCCTTCGAGGGGCATGTAGAAGAGTTCTCTGCGCGAGAAGAACGTGTAGAAACTGCAGTTGATATAGCACGCCGGGAGCGTGAAGAAAGAAAAAGACGATTGAAAAGAGAACGTCCAGATGAAAAACCTGCACATATATCACCATCACCTGGTTATGATCAGATGTTCCATACAAAGATCCTAAAATCATATGATAGAACTAAGCTTCCTCCAGGTTGGTTGGACTGTCCTTCATTTGGTCAGGAAAATTTTTGCATGATACCTTCTAAGGTTCCGCTTGGTGAATCATTCAATGACTACATTGCTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAAAGAGTTTTAGGGAGAAAACTTGGTTTGGTGATTGATTTGACAAATACTTCCCGATACTATCCAGTGTCAGATTTAAAGAAAGAGGGTATCAAGCATGTAAAGATACAATGCAAGGGGCGTGATTCTGTACCTGATAATTTATCTGTAAATCAGTTCGTCTACGAGGTTACACAATTCCTATCACGTCAAAAGCACTCAAAGAAATATATACTTGTCCATTGTACACATGGGCATAATCGTACAGGATACATGATCATCCATTATCTTATGCGTGCTATGTCAATGTCTGTCACTCAGGCAATAAAAATATTTTCTGAAGCACGCCCTCCTGGAATCTACAAACCTGATTACATTGATGCATTATACACATTTTATCATGAAAAAAAGCCTGAAATGGTGGTTTGTCCTCCTACTCCAGAGTGGAAGAGATCTTCTGAGTTTGATCTTAATGGTGAAGCAGTGCCAGATGATGATGATGATGATGGCATACCAGGCCCTCCCTCGATTGAGAACCATGAGACAGATGGAATAATGACAAATGATGATGTTTTGGGAGATGAAATACCTAACGATCAGCAAGATGCATTCCGGCAGTTCTGTTATCAATCACTCAAATTGGGTGTTGGGGCTAGAGGACACACAAATTTTCCAGGGTCGCATCCAGTCTCTCTGGACAGGGATAATTTGCAGTTGTTACGGCAACGCTATTATTATGCAACATGGAAAGCTGATGGAACACGATATATGATGCTGATAACTATGGATGGATGTTACTTAATTGATAGAAGTTTCAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGGGCACAAATGATGGTTTGGGAGAGAGGACCCACCACTTCACATTACTTGACGGGGAGATGATTATTGATACATTGCCAGATTCACATAAGCAGGAGAGGAGATATCTTATATATGATCTGATAGCTATTAACCAATTATCAGTAATAGAGCGACCTTTCTATGAAAGGTGGAAGATGCTTGAAAAAGAAGTGATTGAACCTAGGAATCAGGAGCGACATAATATATACCAGAGCAGAAACCCTTACTATAGATATGACCTGGAACCATTCAGGGTTAGGAGGAAAGACTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAGGAATTCATTCCAAGACTCTCGCATGCTGCTGATGGCCTTATATTTCAGGGTTGGGATGATCCTTATATACCACGAACTCATGAAGGCCTCTTAAAATGGAAATATCCTGAGCTGAATTCAGTTGATTTCCTCTTTGAGATTGAAGATGATTGTCAGCTACTTTTTCTCTATGAACGGGGAAAGAAGAAACTCATGGAAAGGAATAGGGTTGCATTCAGAGATGGTTCCGATCCCTCACTTTATTCTGGAAAGATCATAGAGTGTTCCTGGGATTCTGATGAACAGGAATGGGTATGCATGCGAGTGAGGACAGACAAATCAACTCCAAATGAGTTCAATACCTATAAGAAGGTGATGCGAAGTATAAAAGACAATATTACGCAGGATGTTTTGTTGAATGAGATATACGAGACTATTCGCCTTCCCATGTATGCTGATAGGATACGAATTGATAGTAAAGCACACCATCATACTAACATGGCGCGGCGAAAGTGA 2049 0.4061 MIVAMDLNASPVPEDDEEPFEGHVEEFSAREERVETAVDIARREREERKRRLKRERPDEKPAHISPSPGYDQMFHTKILKSYDRTKLPPGWLDCPSFGQENFCMIPSKVPLGESFNDYIAPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRDSVPDNLSVNQFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDDGIPGPPSIENHETDGIMTNDDVLGDEIPNDQQDAFRQFCYQSLKLGVGARGHTNFPGSHPVSLDRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRGTNDGLGERTHHFTLLDGEMIIDTLPDSHKQERRYLIYDLIAINQLSVIERPFYERWKMLEKEVIEPRNQERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHAADGLIFQGWDDPYIPRTHEGLLKWKYPELNSVDFLFEIEDDCQLLFLYERGKKKLMERNRVAFRDGSDPSLYSGKIIECSWDSDEQEWVCMRVRTDKSTPNEFNTYKKVMRSIKDNITQDVLLNEIYETIRLPMYADRIRIDSKAHHHTNMARRK 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1867 682 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Glsi06g1867 682 Gene3D - 551 659 IPR012340 -
Glsi06g1867 682 Gene3D DNA ligase/mRNA capping enzyme 313 550 - -
Glsi06g1867 682 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 265 IPR020422 GO:0006470|GO:0008138
Glsi06g1867 682 CDD Adenylation_mRNA_capping 342 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Glsi06g1867 682 Pfam Dual specificity phosphatase, catalytic domain 139 259 IPR000340 GO:0008138|GO:0016311
Glsi06g1867 682 SUPERFAMILY Nucleic acid-binding proteins 555 666 IPR012340 -
Glsi06g1867 682 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 276 IPR029021 -
Glsi06g1867 682 MobiDBLite consensus disorder prediction 1 68 - -
Glsi06g1867 682 MobiDBLite consensus disorder prediction 283 316 - -
Glsi06g1867 682 FunFam mRNA capping enzyme family protein 83 297 - -
Glsi06g1867 682 ProSiteProfiles ATP-dependent DNA ligase family profile. 445 580 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Glsi06g1867 682 PIRSF mRNA_capping_HCE 73 682 IPR017074 GO:0004484|GO:0006370|GO:0140818
Glsi06g1867 682 PANTHER MRNA-CAPPING ENZYME 82 664 - -
Glsi06g1867 682 Gene3D Protein tyrosine phosphatase superfamily 65 282 IPR029021 -
Glsi06g1867 682 FunFam mRNA capping enzyme, putative 313 550 - -
Glsi06g1867 682 MobiDBLite consensus disorder prediction 23 62 - -
Glsi06g1867 682 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Glsi06g1867 682 Pfam mRNA capping enzyme, catalytic domain 354 552 IPR001339 GO:0004484|GO:0005524|GO:0006370
Glsi06g1867 682 SMART dsp_5 121 261 IPR020422 GO:0006470|GO:0008138
Glsi06g1867 682 Pfam mRNA capping enzyme, C-terminal domain 557 650 IPR013846 -
Glsi06g1867 682 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 314 553 - -
Glsi06g1867 682 FunFam mRNA capping enzyme family protein 551 659 - -
Glsi06g1867 682 CDD RNA_5'-triphosphatase 90 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1867 Glsi-ChrGlsi06 65724485 65739562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1867 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.015 0.0 961