Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1861 ATGCTTCAAATTCGGCTTAGTAAGTTGCCGGCCTCAGAAGGTTCAGCCGGGGTGAAACCCTCATCTGCTGAGACTGTTACAGTTGTATGTCCTGAACATCTAGTCCTTGCTGATCTTCCTGTAGCGAAGGGCATAGGTGCAGCCACTGCTACTTCTGTTGTCAAGTCTGTGGGTCGTAGGTCTCGCTGCCAGCCTGGTGAGCGAGTCCATTTCTGTGTTCGTTGTGATTTCCCAATTGCTATCTATGGACGGCTGAGCCCTTGTGACCATGCCTTCTGTCTTGACTGTGCTAGAAGTGACTCAATGTGCTACCTGTGCGATGAACGAATCCAGAAAATTCAGACAATCAAAATGATGGAAGGAATCTTTATCTGCGGCGCTCCTCACTGTCTTAAGTCTTTCTTAAAGAGGGCTGAACTTGAATCTCACATCCAAGACAACCATGCAGACCTTCTTCGGCCCAATGCAGATAAAGAAGATGGAAATGAGTCAGAGGCACAGAGTGTTAGGCAATCTACAGCATCAGACTCCACTGCTAGAGGTCCCCAAAGGCCAGTTTTTTCTCCTGGTTCAAATTCCCAGGTCAATGATTGGGAAGACAAAAATCGTCGACAGCCAATGCGAGAGCAGCCACCTTCAAGGCCGATTCTACAGCCAAAGCCACCGTATTTTGGTCAAGCTCAAAATCTCCCTTCAGATCCCCAATCTGGCCCTACTGGAGCTATTCAACAGGGCTTCCATCAGCAAAGTTTTGACATACAGCGGCCCCCACGTGAACCCTCCCTTTTTGCCGAGAGACAGCAAGGAGCTGCCCCAGAGACCCCCTTTCCTGATTATCCATCTATGCATTCTGCCCAGCCACCTAACTTTGCTGTGCCAGTTAATCCAAACCCAATGCTGAACCCTCCTATGCCATTTGGTTATCCCCCTTACCCGCATGAGGGAGCTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAAGACTCAGCTTCTGAAATAGGTGCAGAACAGGGTTCGTTACTGGGTTTCCCACCAGGTCCAGCAAGTGGCCCAAATTTTCCAGCAAATTATCCCCAGCCCTGGAATGCAGGAATAACTGGTGTGCCTTTTGATCAAGCCCAGGGTAGTATGATTATGGATCCAAGGGATGCCAAAGGTATTTAG 1170 0.4906 MLQIRLSKLPASEGSAGVKPSSAETVTVVCPEHLVLADLPVAKGIGAATATSVVKSVGRRSRCQPGERVHFCVRCDFPIAIYGRLSPCDHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGIFICGAPHCLKSFLKRAELESHIQDNHADLLRPNADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQVNDWEDKNRRQPMREQPPSRPILQPKPPYFGQAQNLPSDPQSGPTGAIQQGFHQQSFDIQRPPREPSLFAERQQGAAPETPFPDYPSMHSAQPPNFAVPVNPNPMLNPPMPFGYPPYPHEGAQPFYAAPYDMPRQDSASEIGAEQGSLLGFPPGPASGPNFPANYPQPWNAGITGVPFDQAQGSMIMDPRDAKGI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1861 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
Glsi06g1861 389 MobiDBLite consensus disorder prediction 228 243 - -
Glsi06g1861 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 388 IPR040383 GO:0016567|GO:0061630
Glsi06g1861 389 MobiDBLite consensus disorder prediction 264 290 - -
Glsi06g1861 389 MobiDBLite consensus disorder prediction 166 196 - -
Glsi06g1861 389 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Glsi06g1861 389 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Glsi06g1861 389 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Glsi06g1861 389 MobiDBLite consensus disorder prediction 152 243 - -
Glsi06g1861 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
Glsi06g1861 389 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1861 Glsi-ChrGlsi06 65670900 65673355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1861 1 367 C2H2 Transcription Factor Family AT5G01160 51.467 8.72e-113 332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1861 06 65670900 65673355 Glsi06g1861 06 65670900 65673355 ECH