Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1841 ATGAAGGAGAGAAATGAAGCCAGCCAAATATGCAACCAACTGGCCACGGGAAGGGGAAGAGGTCGAAAAAGTTGCTCAAATGGCTACGGGCAGGTGAGTGAACCAGAACAGGCCAAGAAGGCTCCTCAATTGGCTTCCGAAATCAAAGCAGAGGAGGGGAGGCAGAAGTTGGGGATGGCGACGCGTGAACGAGCAAGGAACCCAACTTTCAGGATCAAAGATGATATTGGGCTAATTGAGCTGATTGTCCGATTAGATGATATTGAGCTGATTGTCCGATTAGATGATATTGAGCTGATTGGGTCAATCAAGCATCAGCTCGATTCAATAAGCCCAAATGCAGGCAATGTCATTGTCTATGCCTTCAACAAGAACATGAGTCTCTGTCTTATAGACCATTGAGGTGGTGAAGAAGAGGTGCAAACCCCAAAGCTCCAAACTTTGAGGCATTTCCCTCCTGGGTTTTCCAAAATGGCAACTATAGAGATGTCCCGTGGAGATTTGGAGCAGGGAAGTCATCGCCGTTCCGTGGCTGGAAGTGACATGAGCGCTGAGGGGAGCGTGTGTTTCTCTGATGCTGAAGATGGTTCGTGCTATTCCCATTTCTATTCAACAAATGGTGGCTCTTACGACGATAACGATTACACCTTTGCTTGTGTTTCTGATCCTGAGGGTGGGGGGGTTCTAAATTCTGGAAGAGCTTCTTTTGTCACTGATTGTTCAGTGGAGGTGGAAATTGAAAGTGGGGTTCCAGAAATTAAGGTGCACTTGGCAAAGGTAGAGAGAGATTGCAGAATCTGTCACCTGGGTTTGGAGAGTGATAGCCATGAATGTGGGGTTCCCATTGAATTGGGTTGTTCTTGCAAGGATGATTTAGCCGCTGCTCATAAACACTGTGCTGAGGCCTGGTTCAAGATCAAGGGGAATAGGACCTGTGAAATTTGTCATTCTATTGCGCGGAATGTTTATGGAGCAAATGAGGAGTCAACAGAGCATTCAAGTGACAGCAACAATGCCACTGCAGCATCCACAGCTTCTGCCCCGGCTCCCTCTGAAACTCGAAGATTTTGGCATGGCCATCGCTTCCTGAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTCTTCCACTTCAATGTGCCATCATCCTAG 1164 0.4699 MKERNEASQICNQLATGRGRGRKSCSNGYGQVSEPEQAKKAPQLASEIKAEEGRQKLGMATRERARNPTFRIKDDIGLIELIVRLDDIELIVRLDDIELIGSIKHQLDSISPNAGNVIVYAFNKNMSLCLIDHXGGEEEVQTPKLQTLRHFPPGFSKMATIEMSRGDLEQGSHRRSVAGSDMSAEGSVCFSDAEDGSCYSHFYSTNGGSYDDNDYTFACVSDPEGGGVLNSGRASFVTDCSVEVEIESGVPEIKVHLAKVERDCRICHLGLESDSHECGVPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSIARNVYGANEESTEHSSDSNNATAASTASAPAPSETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1841 387 PANTHER ZINC FINGER, RING-CH-TYPE 171 386 - -
Glsi06g1841 387 SUPERFAMILY RING/U-box 261 318 - -
Glsi06g1841 387 MobiDBLite consensus disorder prediction 1 43 - -
Glsi06g1841 387 SMART ringv_2 263 316 IPR011016 GO:0008270
Glsi06g1841 387 ProSiteProfiles Zinc finger RING-CH-type profile. 256 322 IPR011016 GO:0008270
Glsi06g1841 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 324 IPR013083 -
Glsi06g1841 387 CDD RING_CH-C4HC3_MARCH 264 316 - -
Glsi06g1841 387 Pfam RING-variant domain 264 315 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1841 Glsi-ChrGlsi06 65493229 65506114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1841 233 387 C3H Transcription Factor Family AT5G05830 63.694 1.64e-66 208