Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1840 ATGGGGGCTTGTTGCTCTAAATTCTCTCTCTGCTGGTTCCACTCCCCCTTCAAATCTTCTGTCCTTGAATCCTCCGACCTGGAAAATGGTGGCAAAAGTGACCGAGACTTGTGGCCCAGTTTTGGGGAGTTTAGCTTGGAGCAACTGAAGGCTGCCACAAATGGGTTCTCCTCCGAAAATATAGTGTCCGAGCACGGCGAAAAAGCCCCCAACGTTGTTTACAAAGGGAAGCTCGAGAGTGGCCAGTGGATCGCCATCAAACGCTTCAACAAGTTCGCTTGGCCCGATTCTCGCCAATTCCTCGAGGAAGCTAAACAAGTGGGGAGTCTGAGAAGTGAGCGATTGGCAAACTTAATTGGTTATTGCTATGAAGGGGACGAGAGGTTGCTGGTAGCAGAGTTCATGCCCCATGAAACTTTGGCTAAGCATCTCTTTCACTGGGAGGCACAACCCATGAAATGGGCAATGAGGTTGAGGGTGGCCTTGTACTTAGCTCAAGCTCTAGAGTATTGCAGCAGTAAAGGGAGGGCTTTGTATCATGATCTCAATGCCTACAGGATCTTGTTTGATCAGGATGGTAATCCCAGGTTGTCTTGCTTTGGGCTCATGAAGAACAGCAGAGATGGCAAAAGTTACAGTACTAACTTGGCCTTCACCCCTCCTGAGTACTTGAGGACAGGTAGAGTGACACAAGAGAGTGTGGTTTACAGTTTTGGAACTCTGTTGCTAGATCTCCTGAGTGGTAAACACATTCCCCCAAGCCATGCACTTGATCTGATTCGTGGCAAAAACTTTTTGATGTTAATGGATTCTGCCTTGGAGGGTCATTTTTCAAAGGAGGATGGAACTGAGTTGGTGCGTTTGGCTTCCCGTTGTTTACAATATGAAGCTCGAGAGAGGCCCAATGCTAAATCCCTTGCTGCTTCTCTATTGTCACTTCAGAAAGAAACTGAGGTCCCTTCGTATGTTTTGATGGGTCTCCGGCATGAAACTGCATCCTCAACCAAGCCATCATTGACACCTTTAGGTGAAGCTTGTTTGAGACTTGATCTTACTGCCATACATGAAATATTGGAGAAGCTTGGATACAAGGATGATGAGGGAATTGCCAATGAGCTTTCCTTTCAAATGTGGACTAGTCAAATGCAGGATACCCTGAATTTGAAGAAGCACGGAGATACTGCTTTCAGAGCTAAGGACTTTGTCACTGCCGTTGACTGCTACACGCAATTCATAGATGGAGGGACCATGGTATCACCCACTGTGTATGCAAGGCGGTGCTTGTCTTATCTGATGAATGGAATGGCACAGGAAGCTCTGGGGGATGCCATGCAAGCCCAAGTGGTGTCACCTGAGTGGTCTACTGCTCTGTATCTTCAAGCAGCTTGTCTTTTCAGGCTTGGAATGGAAAATGATGCACAAGAAACTCTCAGAGATGGGACCAACGCGGAAACCAGAAAGAACAAGAATTTGAAAACTGTATAG 1485 0.4694 MGACCSKFSLCWFHSPFKSSVLESSDLENGGKSDRDLWPSFGEFSLEQLKAATNGFSSENIVSEHGEKAPNVVYKGKLESGQWIAIKRFNKFAWPDSRQFLEEAKQVGSLRSERLANLIGYCYEGDERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTQESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKEDGTELVRLASRCLQYEARERPNAKSLAASLLSLQKETEVPSYVLMGLRHETASSTKPSLTPLGEACLRLDLTAIHEILEKLGYKDDEGIANELSFQMWTSQMQDTLNLKKHGDTAFRAKDFVTAVDCYTQFIDGGTMVSPTVYARRCLSYLMNGMAQEALGDAMQAQVVSPEWSTALYLQAACLFRLGMENDAQETLRDGTNAETRKNKNLKTV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1840 494 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Glsi06g1840 494 Pfam Protein tyrosine and serine/threonine kinase 73 309 IPR001245 GO:0004672|GO:0006468
Glsi06g1840 494 FunFam probable serine/threonine-protein kinase At4g35230 383 492 - -
Glsi06g1840 494 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Glsi06g1840 494 Gene3D Tetratricopeptide repeat domain 383 494 IPR011990 GO:0005515
Glsi06g1840 494 SUPERFAMILY TPR-like 383 478 IPR011990 GO:0005515
Glsi06g1840 494 Gene3D Transferase(Phosphotransferase) domain 1 136 360 - -
Glsi06g1840 494 SUPERFAMILY Protein kinase-like (PK-like) 37 320 IPR011009 -
Glsi06g1840 494 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 18 489 IPR045845 GO:0004672|GO:0009742
Glsi06g1840 494 Gene3D Phosphorylase Kinase; domain 1 32 134 - -
Glsi06g1840 494 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1840 Glsi-ChrGlsi06 65484157 65490833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1840 44 310 Glycoside Hydrolase AT3G07070 35.254 5.57e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Glsi06g1840 PK_Tyr_Ser-Thr 4.4e-26 CL0016