Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1820 ATGCATGCAGTAGTAACGTCGTTTGAGTATGTCGCCGGCCTTGGTAATGCAGCTCCCTATGCAACCTTGGCTATAAAAGCCATGTCCAAACATTTTAAGTGCTTGAACAATGTAATCACTGACCAGCTTCAGTTCTCAAATAAGGCTCATTTTCACATTAGCAACAGGAAGGATGAAGAATCCCCAAGGTTTGGCAATGATGATCATAGAGGACCTAATAGGCAAATTAGGCCTGTTCAGAACCCAGGATTTGTAGACCACCAACCGGTTTGGCGACCTCAACGAGGACTACCTGAGCGCGCTGTAACAGTTCTCCGGGCATGGTTGTTCGAGCACTTTCTTCACCCTTATCCTACTGATACAGACAAGCTAATGTTGGCTAAACAAACCGGTCTGTCTCGTAGCCAGGTTTCAAACTGGTTTATTAATGCAAGAGTAAGGCTATGGAAACCAATGGTGGAAGAAATACATACGCTAGAAACACGGCAAACTCAAAAGAATCCTCAAATCCGGGAAGACCATAACCGGAACCGGTCCGATCTTGTTTCCGAGAATCCATCTACCTCCACTGATAAGTTCCAAGATACTCCTTTTAAACGCTCTAGAAATGAACCTCCTGATTTGCCAGCAGTGAGGAGTCATCAAGAACATCTGAACCTTCCTTATGCTGCAAGCAACAATAACCAGCCAGTGGGTGTTGGATCCGTGAGCATGGCGGTTCCTGGCAACGGTGTCTCGCTGACACTAGGCCTCCATCAAAATCATGGGATTAATTTATCTGAACACTTTCCCATGACTGCAGCAACTCAACGTTTCAATCTCGCCCATGAACCCGGGACCCAGCATTATGGAAGAGATCATGTTATGGGAGGGCAACTATTGCATGACTTTGTTGGCCTGATCCAATTCGCCCTTGTGTTGGTCTTATCAACAGGAATTGAGTCCTTGAGGTCAAGCTCAGCCTTTTCTGGGTCTCAGAGATTGCTAAGTTTTGGAGGAAGGGAGTCTATGAATATGGAGGCTCGAGTGGGGATGGTCGTTGAAGGAGGACAGAGAGCTCTGGATTCTGCCCATGGTAGTGTCGTCGATGGAAGTGCGAGGAAATTCTTGCAGCAGAAGAACCATACGAAGCAGGCGTTGAATCAACCATCCCAGATAGGAACGGTGAATCAGCTTCTCGCAGGTGGTATCGCAGGTGCCTTTAGCAAGACCTGTACGGCGCCCCTTGCTCGCCTCACTATCCTTTTTCAGGTGCAAGGAATGCATTCTAATGTGGCAGCATTGAGTAAGCCTTGCATATGGCATGAGGCTTCACGTATTATCAATGAAGAAGGGTTTAGAGCATTTTGGAAAGGCAATTTGGTGACCATTGCTCATCGTCTTCCTTATTCTGCAGTCAGCTTCTATGCCTATGAACGCTATAAGAATCTATTATATTCACTTCTGGGGGAAAATCGTAGAGGAGTTACAAGTGCAGACCCCTTTGTGCACTTTGTAGGTGGTGGTTTGGCAGGCATAACGGCTGCTTCTGCCTCATATCCTTTGGATCTTGTGAGAACACGGCTTGCAGCGCAGAGAAGTGCCATATACTACCAGGGCATTTGGCATGCTTTTAGTACCATTTGTAGAGAGGAAGGTGTTTTGGGCCTATATAAGGGACTTGGAGCGACCTTGTTGGGTGTTGGGCCCAGCATAGCTATAAGTTTTTCAGTTTATGAGACCTTACGTACTTTTTGGCAGTCCCAAAGGCCCGATGATCCCACTGTCATGGTCAGTCTTGCTTGTGGAAGTCTCTCTGGAATTGCATCATCAACAGCCACATTTCCTTTGGATCTCGTAAGGCGCCGAAAGCAGTTAGAGGGGGCTGGTGGTCGAGCACGAATCTATAACACTGGCTTGTTTGGGACATTTGGGCATATAATTCGTAATGAAGGGGTACGAGGATTGTATAGAGGCATCCTGCCTGAGTATTACAAGGTTGTCCCCAGTGTGGGCATTGTCTTTATGACTTACGAGACATTGAAGATGCTTCTGTCAGGCTATCCAAGCTTCTAG 2055 0.4686 MHAVVTSFEYVAGLGNAAPYATLAIKAMSKHFKCLNNVITDQLQFSNKAHFHISNRKDEESPRFGNDDHRGPNRQIRPVQNPGFVDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHTLETRQTQKNPQIREDHNRNRSDLVSENPSTSTDKFQDTPFKRSRNEPPDLPAVRSHQEHLNLPYAASNNNQPVGVGSVSMAVPGNGVSLTLGLHQNHGINLSEHFPMTAATQRFNLAHEPGTQHYGRDHVMGGQLLHDFVGLIQFALVLVLSTGIESLRSSSAFSGSQRLLSFGGRESMNMEARVGMVVEGGQRALDSAHGSVVDGSARKFLQQKNHTKQALNQPSQIGTVNQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSNVAALSKPCIWHEASRIINEEGFRAFWKGNLVTIAHRLPYSAVSFYAYERYKNLLYSLLGENRRGVTSADPFVHFVGGGLAGITAASASYPLDLVRTRLAAQRSAIYYQGIWHAFSTICREEGVLGLYKGLGATLLGVGPSIAISFSVYETLRTFWQSQRPDDPTVMVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARIYNTGLFGTFGHIIRNEGVRGLYRGILPEYYKVVPSVGIVFMTYETLKMLLSGYPSF 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1820 684 PRINTS Mitochondrial carrier protein signature 452 472 IPR002067 GO:0055085
Glsi06g1820 684 PRINTS Mitochondrial carrier protein signature 551 569 IPR002067 GO:0055085
Glsi06g1820 684 PRINTS Mitochondrial carrier protein signature 391 404 IPR002067 GO:0055085
Glsi06g1820 684 PRINTS Mitochondrial carrier protein signature 596 618 IPR002067 GO:0055085
Glsi06g1820 684 PRINTS Mitochondrial carrier protein signature 507 525 IPR002067 GO:0055085
Glsi06g1820 684 PRINTS Mitochondrial carrier protein signature 404 418 IPR002067 GO:0055085
Glsi06g1820 684 MobiDBLite consensus disorder prediction 56 74 - -
Glsi06g1820 684 MobiDBLite consensus disorder prediction 159 213 - -
Glsi06g1820 684 ProSiteProfiles 'Homeobox' domain profile. 88 151 IPR001356 GO:0003677
Glsi06g1820 684 Gene3D - 94 156 - -
Glsi06g1820 684 SMART HOX_1 91 155 IPR001356 GO:0003677
Glsi06g1820 684 SUPERFAMILY Homeodomain-like 93 157 IPR009057 -
Glsi06g1820 684 SUPERFAMILY Mitochondrial carrier 385 674 IPR023395 -
Glsi06g1820 684 PANTHER SOLUTE CARRIER FAMILY 25 374 678 - -
Glsi06g1820 684 ProSiteProfiles Solute carrier (Solcar) repeat profile. 492 578 IPR018108 -
Glsi06g1820 684 FunFam BEL1-like homeodomain protein 9 94 156 - -
Glsi06g1820 684 CDD homeodomain 91 152 IPR001356 GO:0003677
Glsi06g1820 684 Gene3D Mitochondrial carrier domain 383 680 IPR023395 -
Glsi06g1820 684 ProSiteProfiles Solute carrier (Solcar) repeat profile. 386 477 IPR018108 -
Glsi06g1820 684 ProSiteProfiles Solute carrier (Solcar) repeat profile. 587 677 IPR018108 -
Glsi06g1820 684 Pfam Homeobox KN domain 108 147 IPR008422 GO:0003677|GO:0006355
Glsi06g1820 684 MobiDBLite consensus disorder prediction 195 211 - -
Glsi06g1820 684 MobiDBLite consensus disorder prediction 159 180 - -
Glsi06g1820 684 MobiDBLite consensus disorder prediction 56 92 - -
Glsi06g1820 684 Pfam Associated with HOX 1 40 IPR006563 -
Glsi06g1820 684 Pfam Mitochondrial carrier protein 385 479 IPR018108 -
Glsi06g1820 684 Pfam Mitochondrial carrier protein 588 679 IPR018108 -
Glsi06g1820 684 Pfam Mitochondrial carrier protein 493 580 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1820 Glsi-ChrGlsi06 65261480 65270708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1820 337 676 Organic Solute Cotransporters AT3G55640 68.622 1.12e-161 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi06g1820 Mito_carr 2.8e-22 No_clan