Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1806 ATGGAGCAACATAGGGCTACATCCTTAATCTTCACAATGGCAATGCTGCTATCTTGCTCCCCTGCCGGCTCTGTCCGGCGTTGTGGCAGCTGTGGGTTGAATCCAGTTCCATACCCATTAAGCACAGGACCCGATTGTGGCGACCCGTGGTACAAGATAAGGTGCACCGCAGGCTCGTTGTGGTTGGATGCTCTCGGTGGATCATCCTACATGATCAAGTCCATCGACTCGGCAAGGCAACGGATCATTATCCGACCAGCAGGATTCGCCCGAAACGCGTGCGTGTCCTCGGACTTCAGAAGTGAAGGCATTCACCTGAACAAGACCCTCGCCTTCAACATCACCAGCAGCAACACCGTCTTTCTGTTCAACTGTACGGACGAGATTCTGAAATCGCAACCGCCCATAAACTGTTCGACGAATAGCCTGTGCCAAAGCTACATCAAGGACCATGCGGATGCCGGCGCATGCAGCAGCATGCGCGTGCGCTTGTGTTGCACATTCAGGACGGGGAGGTCCTACTCGGAGCATATGGTGAGGGTGCATAGTGGAGGGTGTGCTGCATATCAGAGTTTTGTTAATTTTGAAATCAAGACAGCACCGCCGGCGAAGAAGTGGCCGGAGCCGGGTATGGAGGTGGAGTGGGTGTTACCGGAGGAGCCAATTTGTAAGGGGCCAATGGATTGCAAGGAGCTTTTGAACTCCAAGTGTTTGGTGGATCCCACTGATGTCGGGCGGCTAAGATGCTTCTGCAATGCTGGCTTCAAGTGGGACCCCATCAATGGTTTGTGTCAAAGTCAAAGTCAAAATGTAAACTGTGGAAAACATGGAAAAGGGAAACATTGCAAGCTTCGGAAGAAAAAGACTATACTTCTCGCTGCTGTGGTCCTTTCCTTAGGAGCAATACTGTGTATTGCAACGTCAATTGCGATCCTTCTCTACAAGAAACAAGACAAATCCAAGAGACAAGCACAAAAGAATCTAATGAAACAAAGGGAACGAATCCTAAGTGCCAAAGCTAGCGGCTTATCAGCCAGGATCTTCACAAGCCGAGAGATCAAAAAAGCCACAAACAACTTCTCCAAAGACAACCTCATCGGCTCAGGCGGCTTCGGAGAAGTCTTCAAAGGAACCTTCGAAGACGGAACCATCACAGCCATAAAGCGAGCCAAGCTAGGGAACACCAAAGGCATCGACCAAATAGTCAACGAGCTTACTGATAAGAGTGATGTTTATAGTTTTGGGGTGGTTTTGTTGGAGCTGATAACTTCTCAGAAGGCCATTGATTTTAATAGGGAAGAAGAGGATGTGAACTTGGTGGTTTATGTGAAGAAGATGATGAAGGAAGAGAGGGTTTTGGATGTTGTTGATTCGTTCATCAAAGAGGGAGCTAGCAAGTTGGAGTTGGAGACTGTGGAATCTTTGGGTTTTCTTGCTGCTGCGTGCTTGGATGAGCAGAGGCAGAATCGGCCTACTATGAAACAAGTTTCGGATGAGATTGAATACTTGATTAGTGTTATTGCTAGTGATGTTTCCAAAACATGA 1545 0.4835 MEQHRATSLIFTMAMLLSCSPAGSVRRCGSCGLNPVPYPLSTGPDCGDPWYKIRCTAGSLWLDALGGSSYMIKSIDSARQRIIIRPAGFARNACVSSDFRSEGIHLNKTLAFNITSSNTVFLFNCTDEILKSQPPINCSTNSLCQSYIKDHADAGACSSMRVRLCCTFRTGRSYSEHMVRVHSGGCAAYQSFVNFEIKTAPPAKKWPEPGMEVEWVLPEEPICKGPMDCKELLNSKCLVDPTDVGRLRCFCNAGFKWDPINGLCQSQSQNVNCGKHGKGKHCKLRKKKTILLAAVVLSLGAILCIATSIAILLYKKQDKSKRQAQKNLMKQRERILSAKASGLSARIFTSREIKKATNNFSKDNLIGSGGFGEVFKGTFEDGTITAIKRAKLGNTKGIDQIVNELTDKSDVYSFGVVLLELITSQKAIDFNREEEDVNLVVYVKKMMKEERVLDVVDSFIKEGASKLELETVESLGFLAAACLDEQRQNRPTMKQVSDEIEYLISVIASDVSKT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1806 514 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 405 IPR045274 GO:0007166
Glsi06g1806 514 Gene3D Transferase(Phosphotransferase) domain 1 343 401 - -
Glsi06g1806 514 Gene3D Transferase(Phosphotransferase) domain 1 402 510 - -
Glsi06g1806 514 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524
Glsi06g1806 514 Pfam Wall-associated receptor kinase galacturonan-binding 29 84 IPR025287 GO:0030247
Glsi06g1806 514 Coils Coil 314 341 - -
Glsi06g1806 514 ProSiteProfiles Protein kinase domain profile. 360 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1806 514 SUPERFAMILY Protein kinase-like (PK-like) 340 405 IPR011009 -
Glsi06g1806 514 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Glsi06g1806 514 Pfam Protein tyrosine and serine/threonine kinase 404 499 IPR001245 GO:0004672|GO:0006468
Glsi06g1806 514 SUPERFAMILY Protein kinase-like (PK-like) 405 498 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1806 Glsi-ChrGlsi06 65124856 65128453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1806 404 514 Receptor kinase-like Gene Family AT5G02070 60.360 1.30e-41 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Glsi06g1806 PK_Tyr_Ser-Thr 1.7e-06 CL0016