Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1802 ATGAGTCTCAAGATAACCAACCCTATGCCTCGGGTTCCCCCTGTCACTGGAGCATGGAATCCTTTGAATGGAAGAATAGAGCACAATATATTTCTCTGTGCTGGACCAGCTTGTGATGTACTATCTCGTAACCAACGCGAAAATCTAATGGAAACTGTCGCCTCTATCTTTCAAGGAAAGCTCAATATTCTAATAAACAATCCCGGGACAAATATACGTAAGGAAAGCATAGATTATACCGCAGAAGATATATCAACTATAATGAGCACCAATTTTGAGTCTGCTTTCCATTTGAGCCAACTTGCGCATCCACTTCTAAAAGCATCTGGATATGGTAACATAGTATATATCTCTTCAGTTTCGGGTATGAAAGCGTTGCCTTTCATGTCTGTCTATGGACCATCTAAAGGAGCTGTGAATCAACTCACAAGAAACTTGGCATTTGAATGGGCAAAGGATAATATTCGCGTAAATGCTGTAGCACCAGGACCTGTGATGACCCCACTTTTGGAGTCTGGCTTGAAAGAAGCTCGATGGGAAGATTCTTTAAATGCTATAGTGTCTCAAACTCCTATTGCTCGCATAGGAGAGCCTAAAGAGATTTCAGCACTAGCTGCTTTCCTTTGCCTTCCTGCTGCTTCATACATCACTGGACAAATAAACAACGCTGGGACAGCAATACTTAAAAAAGCTGCAGATTATACTGCTGAAGATATATCAACTGTAATGGGCACTAATTTTAAGTCTACTTACCATTTGAGCCAACTTGTACGCCCCCTTCTAAAAGCATCAGGATACGGTAACATAGTAAATATCTCCTCCATTGCAGCTTTGAAAGCTTCTCCTCTCGTTTCAGTCTATGCAGCATCTAAAGGTACTGCCAGCATAGCACTCACAGGATTTGAATTTCTAAATCTTGATTGCAATGCTACTAGAAATAATCAATGCTATATGCTTGATTGCACTGATCATTCCACGTGTTTATATCACCATGTCAGCATCCGACGTGGCACATCCTATATCCCTGTAATTGATACGCCTCCGCCCATTCTTCAAGCCTCCTTTTTTCTTTTTGCTTTCCATCAACAAACCCGGAGCGTCGTTTTCTTATTTTTCTGCTTCTTCTTCTTCTTCTCTGCCTCTGTGAGATCGGAAGTGTAA 1161 0.4134 MSLKITNPMPRVPPVTGAWNPLNGRIEHNIFLCAGPACDVLSRNQRENLMETVASIFQGKLNILINNPGTNIRKESIDYTAEDISTIMSTNFESAFHLSQLAHPLLKASGYGNIVYISSVSGMKALPFMSVYGPSKGAVNQLTRNLAFEWAKDNIRVNAVAPGPVMTPLLESGLKEARWEDSLNAIVSQTPIARIGEPKEISALAAFLCLPAASYITGQINNAGTAILKKAADYTAEDISTVMGTNFKSTYHLSQLVRPLLKASGYGNIVNISSIAALKASPLVSVYAASKGTASIALTGFEFLNLDCNATRNNQCYMLDCTDHSTCLYHHVSIRRGTSYIPVIDTPPPILQASFFLFAFHQQTRSVVFLFFCFFFFFSASVRSEV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1802 386 Gene3D - 218 301 - -
Glsi06g1802 386 FunFam Short-chain dehydrogenase reductase 25 220 - -
Glsi06g1802 386 PANTHER TROPINONE REDUCTASE 220 294 IPR045000 GO:0016491
Glsi06g1802 386 Gene3D - 27 217 - -
Glsi06g1802 386 PRINTS Glucose/ribitol dehydrogenase family signature 106 122 IPR002347 -
Glsi06g1802 386 PRINTS Glucose/ribitol dehydrogenase family signature 153 170 IPR002347 -
Glsi06g1802 386 PRINTS Glucose/ribitol dehydrogenase family signature 191 211 IPR002347 -
Glsi06g1802 386 PRINTS Glucose/ribitol dehydrogenase family signature 59 70 IPR002347 -
Glsi06g1802 386 PRINTS Glucose/ribitol dehydrogenase family signature 132 151 IPR002347 -
Glsi06g1802 386 Pfam Enoyl-(Acyl carrier protein) reductase 37 220 - -
Glsi06g1802 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 220 IPR036291 -
Glsi06g1802 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 217 292 IPR036291 -
Glsi06g1802 386 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 120 IPR002347 -
Glsi06g1802 386 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 59 70 IPR002347 -
Glsi06g1802 386 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 151 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1802 Glsi-ChrGlsi06 65057039 65065561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1802 220 292 Miscellaneous Gene Families AT2G29150 56.164 6.43e-18 81.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1802 06 65057039 65065561 Glsi06g1802 06 65057039 65065561 ECH
Glsi06g1802 06 65057039 65065561 Glsi08g0662 08 5226278 5235508 ECH