Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1794 ATGGAACAAGGTCAATGTTGGAATATGTGGACAAAGAGAAAGTACTCTGTGAGCTCTAATCTTGCTTCCTATGAAGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTGGGGGTCTAGGTGGGTGCACATGGCCACCCAGATCATATTCTTGCAGTTTTTGCAGCAGAGAGTTCAAGTCAGCCCAGGCTCTAGGTGGCCATATGAACGTTCATAGAAGAGATAGAGCTAGATTAAAACAGCCCCGAAGTCCACAAAATAATGAAATTCTCTATCATCATCATCAAAATCCTTTAAACCCATCTCCTACTAACCCTAATTCTGATCCTTCCTTTTTTGCTTCTTCACCTCCATCACCCTCACCTAATTCTAAGGATTTAGCTACATCAATTAATGGGAATATTTGCGGAGAGGAAATTTTCCGGATCCCACATAATTCCCCTCTTTGTTCTTCTAAATCCTGGTCAAACGTAGCTGAAGACAGATCATTATTTTCACATAAGTTTGATCTTAGAGCTGATAATGAGAAGATGTCAAAATTATTAGATTCTGATGTGTCTATAAGCGGCAAGAGGAGGAGAAGAACGGATGCTTCCTCAGTTCCATTCTTCCCAAATTCAATTTCAGTTGATCACAGACATCATATTCAGTCGAAAATGTTGGAATTTAGCCCTAGCTCCATTGAAGAGCTAGATCTGGAGCTAAGGCTCGGTCATAGTCCCAAGGTATAG 735 0.4109 MEQGQCWNMWTKRKYSVSSNLASYEDSWEEQAFAEDAAGGLGGCTWPPRSYSCSFCSREFKSAQALGGHMNVHRRDRARLKQPRSPQNNEILYHHHQNPLNPSPTNPNSDPSFFASSPPSPSPNSKDLATSINGNICGEEIFRIPHNSPLCSSKSWSNVAEDRSLFSHKFDLRADNEKMSKLLDSDVSISGKRRRRTDASSVPFFPNSISVDHRHHIQSKMLEFSPSSIEELDLELRLGHSPKV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1794 244 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Glsi06g1794 244 SUPERFAMILY beta-beta-alpha zinc fingers 48 77 IPR036236 -
Glsi06g1794 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Glsi06g1794 244 Gene3D Classic Zinc Finger 47 101 - -
Glsi06g1794 244 SMART c2h2final6 51 73 IPR013087 -
Glsi06g1794 244 PANTHER OS07G0101800 PROTEIN 22 242 - -
Glsi06g1794 244 Pfam C2H2-type zinc finger 51 75 - -
Glsi06g1794 244 MobiDBLite consensus disorder prediction 94 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1794 Glsi-ChrGlsi06 64953550 64954284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1794 1 242 C2H2 Transcription Factor Family AT5G06070 35.472 6.78e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi06g1794 zf-C2H2_6 1.2e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1794 06 64953550 64954284 Glsi06g1794 06 64953550 64954284 ECH