Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1793 ATGGAGCTTAATCCTCAAAACACAGAGAAATTATCAGAGCAGGTAAGATGGATCTCATCAGATGATCATGGTGGTCCTGGACCAGTGAGATCTTATACTTGTGCCTTTTGTAAGAGAGGGTTCTCAAATGCACAGGCACTAGGAGGTCACATGAACATCCATAGAAGAGATAGGGCCAAGCTCAAGCAATCCTCTGAAGAAAACTTGCTTTCTTTGGACATCTCAATCAAGAACCCTAGCTCTGATCATCATGAACCTCATCATCCTTCTTCGGAAGAGAAAATTTTGCCTCAATCATGCACTATTGCTGATCACAAAAACGACGATAAATTTTCTCATGAACTTCAAAGGAGCAAGGTAATTAATGTTGCTTCTGAACTTACTCAGCTTCCTATTTCTAGTGGGATAGCCAGTATTGCTAGCAATAATAATGAGAGGATTGAAGGGAAGAAGATTGAAATAGACCTTGAGCTTCGGTTAGGTCCTGAGCCACATGAAGCCCCAACTTTGAGCACCAGAGAATTCTTTTGA 531 0.4124 MELNPQNTEKLSEQVRWISSDDHGGPGPVRSYTCAFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENLLSLDISIKNPSSDHHEPHHPSSEEKILPQSCTIADHKNDDKFSHELQRSKVINVASELTQLPISSGIASIASNNNERIEGKKIEIDLELRLGPEPHEAPTLSTREFF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1793 176 PANTHER OS07G0101800 PROTEIN 14 164 - -
Glsi06g1793 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Glsi06g1793 176 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Glsi06g1793 176 Gene3D Classic Zinc Finger 6 94 - -
Glsi06g1793 176 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Glsi06g1793 176 MobiDBLite consensus disorder prediction 76 96 - -
Glsi06g1793 176 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1793 Glsi-ChrGlsi06 64941847 64942377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1793 4 63 C2H2 Transcription Factor Family AT3G09290 59.375 7.01e-19 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi06g1793 None None None