Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1781 ATGGCTTCCGTTGGATCTTCGTATTGGTGCTACAGATGCAATCAGTTCGTTAGGGTTCGAATTGGGGCTGAAGACACTTTGCTTTGCCCTGATTGTGGCTCTGGTTTTATAGAAGAAATCAGGACCCGTAGTAACTCTCCTTTCCATCGATTCCCTGCAGCGGCAATGTACGTCGATGATGAGTCTAACTCCGAGCAGGGTGCTAGCCCAAGACTCCACCGTACCCGGAGGAACGGTGGCGATCGATCCCCTTTTAACCCCGTTATTGTCCTCAGTGGACCCGCTGATGGTGGTGGAAATGAAGGGATTGGAACTGAAAGAGGAAACTTTGAGCTTTACTACAATGAGGGTACCGGTTCGGGTCTTCGGCCTCTGCCTGCAAGTGTCACGGAGTTTTTGATGGGTGCTGGATTTGACCACCTTCTTGACCAGTTGGCTCAACTAGAAGTGACTGGAATTGGGCGATTGCACCAACCTCCGGCATCGAAAGCTGCAATTGAATCGATGCCCATCATCAAGATTGTTGCTACCCATGTCTCCGCGGAATCACATTGTGCAGTTTGTAAGGAACCGTTCGAACTTGACTCGGATGCTCGTGAAATGCCTTGTAAGCACATTTACCATTCTGATTGTATCCTTCCATGGCTTTTAATTCGTAATTCCTGTCCGGTTTGTCGCCATGAGTTACCGACTGAGCTGCGTGGGAGTAGCAGTGGCAGAAATTCGCCGGTGTCTGATGGAGGTAGGGATGATCATACCGTGGGATTAACCATATGGAGACTCCCTGGTGGTGGATTTGCTGTAGGACGGTTCACTGGGGGCAGACGAGCCGCAGAACGTGAACTTCCTGTTGTATTCACTGAAATGGATGGTGGATTTAATAGTGTGGGTGTTCCAAGGAGGATATCTTGGGAATCCAGTGTGAGAAGATCAAGGGAGACTCGGGGATTAGGTAGTGCATTTCGTAACATCTTCTCATACTTGGGGAGGCTTAGGACTTCCTTCTCTCGTTCTTCCAGTGCTGATTCAAATCTGAGCCGTAGAACTCAATCTAATACAGTATTCTCTAGACTCTCAAGGAGGCGCAACTAG 1092 0.4908 MASVGSSYWCYRCNQFVRVRIGAEDTLLCPDCGSGFIEEIRTRSNSPFHRFPAAAMYVDDESNSEQGASPRLHRTRRNGGDRSPFNPVIVLSGPADGGGNEGIGTERGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLAQLEVTGIGRLHQPPASKAAIESMPIIKIVATHVSAESHCAVCKEPFELDSDAREMPCKHIYHSDCILPWLLIRNSCPVCRHELPTELRGSSSGRNSPVSDGGRDDHTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVFTEMDGGFNSVGVPRRISWESSVRRSRETRGLGSAFRNIFSYLGRLRTSFSRSSSADSNLSRRTQSNTVFSRLSRRRN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1781 363 Pfam Ring finger domain 184 226 IPR001841 -
Glsi06g1781 363 MobiDBLite consensus disorder prediction 337 357 - -
Glsi06g1781 363 FunFam E3 ubiquitin-protein ligase RING1-like 147 232 - -
Glsi06g1781 363 Pfam zinc-ribbon 7 40 IPR039525 GO:0061630
Glsi06g1781 363 SUPERFAMILY RING/U-box 165 232 - -
Glsi06g1781 363 MobiDBLite consensus disorder prediction 66 80 - -
Glsi06g1781 363 SMART ring_2 185 225 IPR001841 -
Glsi06g1781 363 MobiDBLite consensus disorder prediction 59 85 - -
Glsi06g1781 363 Pfam Protein of unknown function (DUF1117) 254 359 IPR010543 -
Glsi06g1781 363 CDD RING-H2_RNF126-like 185 226 - -
Glsi06g1781 363 MobiDBLite consensus disorder prediction 337 363 - -
Glsi06g1781 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 230 - -
Glsi06g1781 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 232 IPR013083 -
Glsi06g1781 363 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1781 Glsi-ChrGlsi06 64775240 64776331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1781 124 240 C3H Transcription Factor Family AT5G01980 42.735 6.62e-27 109