Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1757 ATGTTGGTGGCACGTTCACATGTCATGCAACGCATGGTTGGTGCTGTGTGGTTGAAGCATGCATGTGCCGACGTGGAAGATTTGCTAGATCTTGTTGGTCGGCGAAGGGGCCACTTTTTGGAGGATAAGAAGCTTGCTTGTTATGGAGACCCCCATTCTTCCTTTGACTACTGCACCTCTTCAGCTGATTCCCCCCATTCCCTGGCCTCCCTCCATAATAAGTACCCCCTCGTCTTCCTCCCACTCTCCATTCGCCTCAAATCAACGCAACCAACCTTCTCCTTCATTTCCTCTCTCTCTACAGCAATGGCTGCAGTGGTTCTGCTCTGCATCGCCTCATTGGCCTCGCTTTTCGTTGCAACCACTGCTAGAATCCCTGGAGTTTACACCGGTGGCGCCTGGGAGAGTGCCCATGCCACGTTCTATGGCGGCAGTGACGCCTCTGGAACAATGGGAGGTGCTTGTGGCTATGGTAATCTGTATAGCCAAGGCTATGGAGTTAACACTGCAGCTCTGAGCACAGCTCTATTCAACAATGGCCTGAGCTGCGGCGCTTGCTTTGAACTGAAGTGCGACCAAGACCCCAGATGGTGCAACCCCGGAAGTCCTTCCATAATCGTCACAGCCACCAACTTCTGCCCTCCCAACTTCGCTCTTCCCAGCGACAATGGTGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTAGCCATGCCCATGTTCCTTAAGATCGCTCAGTACCGTGCCGGAATCGTCCCTGTCGCTTACCGCCGGGTGACATGCAGAAAGGTAGGAGGAATCAGATACACGATCAACGGTTTCCGTTACTTCAACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCGTGCGCGTGAGTGTTAAGGGCACCAAGACCGAGTGGATGAGCATGAGCCGGAACTGGGGACAAAACTGGCAATCCAACGCCATTCTGGTGGGCCAGGCGCTCTCGTTTAGAGTCACAGGCAGTGACAGGCGCACGTCCACGTCTTTGAACGTGGCACCACCTAATTGGCAGTTCGGTCAAACCTTCATGGGAAAGAATTTCCGCGTCTAA 1083 0.542 MLVARSHVMQRMVGAVWLKHACADVEDLLDLVGRRRGHFLEDKKLACYGDPHSSFDYCTSSADSPHSLASLHNKYPLVFLPLSIRLKSTQPTFSFISSLSTAMAAVVLLCIASLASLFVATTARIPGVYTGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCDQDPRWCNPGSPSIIVTATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVTCRKVGGIRYTINGFRYFNLVLVTNVAGAGDIVRVSVKGTKTEWMSMSRNWGQNWQSNAILVGQALSFRVTGSDRRTSTSLNVAPPNWQFGQTFMGKNFRV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1757 360 PANTHER EXPANSIN-A15 113 358 IPR002963 GO:0009664
Glsi06g1757 360 SMART dpbb_1 169 256 IPR007112 -
Glsi06g1757 360 Pfam Expansin C-terminal domain 267 344 IPR007117 -
Glsi06g1757 360 SUPERFAMILY PHL pollen allergen 265 354 IPR036749 -
Glsi06g1757 360 PRINTS Expansin/Lol pI family signature 133 148 IPR007118 GO:0005576
Glsi06g1757 360 PRINTS Expansin/Lol pI family signature 249 265 IPR007118 GO:0005576
Glsi06g1757 360 PRINTS Expansin/Lol pI family signature 173 191 IPR007118 GO:0005576
Glsi06g1757 360 PRINTS Expansin/Lol pI family signature 341 355 IPR007118 GO:0005576
Glsi06g1757 360 PRINTS Expansin/Lol pI family signature 151 169 IPR007118 GO:0005576
Glsi06g1757 360 PRINTS Expansin/Lol pI family signature 303 317 IPR007118 GO:0005576
Glsi06g1757 360 FunFam Expansin 266 358 - -
Glsi06g1757 360 SUPERFAMILY Barwin-like endoglucanases 133 284 IPR036908 -
Glsi06g1757 360 Gene3D - 120 262 IPR036908 -
Glsi06g1757 360 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 276 355 IPR007117 -
Glsi06g1757 360 Pfam Lytic transglycolase 169 256 IPR009009 -
Glsi06g1757 360 CDD DPBB_EXPA_N 134 261 - -
Glsi06g1757 360 PRINTS Expansin signature 164 178 IPR002963 GO:0009664
Glsi06g1757 360 PRINTS Expansin signature 205 215 IPR002963 GO:0009664
Glsi06g1757 360 PRINTS Expansin signature 191 202 IPR002963 GO:0009664
Glsi06g1757 360 PRINTS Expansin signature 265 277 IPR002963 GO:0009664
Glsi06g1757 360 PRINTS Expansin signature 224 241 IPR002963 GO:0009664
Glsi06g1757 360 PRINTS Expansin signature 241 254 IPR002963 GO:0009664
Glsi06g1757 360 PRINTS Expansin signature 312 333 IPR002963 GO:0009664
Glsi06g1757 360 PRINTS Expansin signature 277 298 IPR002963 GO:0009664
Glsi06g1757 360 PRINTS Expansin signature 341 357 IPR002963 GO:0009664
Glsi06g1757 360 FunFam Expansin 123 262 - -
Glsi06g1757 360 Gene3D - 267 358 IPR036749 -
Glsi06g1757 360 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 152 266 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1757 Glsi-ChrGlsi06 64497785 64506018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1757 105 360 Expansin Gene Family AT2G39700 81.250 3.45e-159 444