LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g1756	ATGGGCGTGTGCTGGAGCAATCGGATTAAGGCCGTGAGCTCTTCCAGTGCAGGGTTCACTTCTAGAAGTGTGAGCAGGGATGGCTCTGACACGAGCTCCAATAGCAGGAATTCATCAGCCTCCATACCCATGACTCCTCGGAGTGAGGTTGAGATCTTGCAATCTTCCAATTTGAAGAGCTTCAGCTACAGTGAACTTAAAACAGCCACAAGAAATTTCCGGCCAGATAGTATCTTAGGAGAGGGTGGATTTGGCTCAGTTTTTAAGGGGTGGATCGATGAGAATTCCCTTGCTGCTACCAAACCGGGAATGGGCATGGTTGTTGCTGTGAAGAGGCTTAACCAAGATGGTTTCCAAGGTCACAAGGAGTGGCTGGCCGAAATCAACTACCTTGGTCAACTGCATCATCCTAATCTTGTCAAATTGATAGGGTACTGCTTGGAGGATGAGCATCGGCTTCTAGCCTATGAATTTATGTCTAAGGGCAGTGTGGAGAATCATCTGTTCAGAAGAGGTTCTCGTTTTGAGCCACTCTCTTGGAGCTTGCGAATGAAAATAGCCCTTGGGGCGGCTAGGGGTCTAGCGTTTATCCATAGTACAGAACCTAAAGTCATATACCGTGACTTCAAGACTTCTAATATCCTTCTTGATACCAACTATAACGCCAAACTTTCTGATTTTGGGTTGGCCAGAGATGGGCCAAGTGGTGATAAGAGCCATGTCTCTACTAGGGTCATGGGAACCCATGGATATGCCGCACCAGAGTATCTCTCAACAGGCCACCTCACTGCCAGGAGTGATGTATATAGTTTTGGAGTAGTTCTTCTAGAAATGTTATCAGGAAGACGTGCTATAGACAAGAACCGGCCATCCGGAGAACACAACCTAGTTGAATGGGCAAAACCTTACCTTTCTAATAAACGTAGAGTTTTTCGGGTTATGGATACCCGACTTGAGGGTCAGTATTCCCTTAGTCGAGCTCAAAGTGCAGCAACTCTTGCTTTTCAGTGTCTTGCTGTAGAATCTAAATTCAGGCCAAACATGGATGAGGTGGTAAGAGCATTGGAGCAGCTTCAGGACTCAAAGGACATGTCTAAAAGTGCTGATAGGAAAGAGCACCGTGTACAAGGCACCGACCTTAGCCATCGTAATGGCTGCCATGCATCCCTCAAAGATAGTGCAGGAGATGCACCCACAAAAGTTTCTTATCCCCGACCTTCTGCATCTCCCCTTTTTGCTTAA	1242	0.4678	MGVCWSNRIKAVSSSSAGFTSRSVSRDGSDTSSNSRNSSASIPMTPRSEVEILQSSNLKSFSYSELKTATRNFRPDSILGEGGFGSVFKGWIDENSLAATKPGMGMVVAVKRLNQDGFQGHKEWLAEINYLGQLHHPNLVKLIGYCLEDEHRLLAYEFMSKGSVENHLFRRGSRFEPLSWSLRMKIALGAARGLAFIHSTEPKVIYRDFKTSNILLDTNYNAKLSDFGLARDGPSGDKSHVSTRVMGTHGYAAPEYLSTGHLTARSDVYSFGVVLLEMLSGRRAIDKNRPSGEHNLVEWAKPYLSNKRRVFRVMDTRLEGQYSLSRAQSAATLAFQCLAVESKFRPNMDEVVRALEQLQDSKDMSKSADRKEHRVQGTDLSHRNGCHASLKDSAGDAPTKVSYPRPSASPLFA	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g1756	413	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	204	216	IPR008271	GO:0004672\|GO:0006468
	Glsi06g1756	413	ProSiteProfiles	Protein kinase domain profile.	73	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g1756	413	FunFam	Serine/threonine-protein kinase BIK1	40	158	-	-
	Glsi06g1756	413	MobiDBLite	consensus disorder prediction	360	413	-	-
	Glsi06g1756	413	SUPERFAMILY	Protein kinase-like (PK-like)	49	360	IPR011009	-
	Glsi06g1756	413	PANTHER	OS01G0588500 PROTEIN-RELATED	34	359	-	-
	Glsi06g1756	413	Gene3D	Phosphorylase Kinase; domain 1	48	158	-	-
	Glsi06g1756	413	Gene3D	Transferase(Phosphotransferase) domain 1	159	383	-	-
	Glsi06g1756	413	MobiDBLite	consensus disorder prediction	360	380	-	-
	Glsi06g1756	413	FunFam	Probable serine/threonine-protein kinase PBL8	159	374	-	-
	Glsi06g1756	413	MobiDBLite	consensus disorder prediction	13	47	-	-
	Glsi06g1756	413	CDD	STKc_IRAK	79	358	-	-
	Glsi06g1756	413	Pfam	Protein kinase domain	76	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g1756	413	ProSitePatterns	Protein kinases ATP-binding region signature.	79	111	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g1756	Glsi-ChrGlsi06	64486343	64489147	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g1756	20	379	Glycoside Hydrolase	AT3G07070	45.822	3.92e-109	325

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Glsi06g1756		Pkinase	2.8e-45	CL0016