Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi06g1755 | ATGAAGGAGAGCGTCGCATTTTGGGCGCTGAAACCGACGTACGTTTCTGCCACATTAATGCTTTCGCATTTCTCACTCTTCTCTCGCTCTTATAATCGCACTAGGAATCGTGGAAGTAATTGTCTGTGGAGAAGGTGGTGGTGGAGGAAGAAGAAGAGTGAAGGAGAAGTGGGTGCAATGCGACTGAAGCTTACGCTAGCAAATTCCCCGAAAGACTGGGATTTGCAGTTGGAAATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGACGCTTTACTACGAGCATATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTTTCTCAGCGCATGAGCACACCCCTTAACCGGGATGCAAAATCGTGCTTAGAAAGGTGGAAGAACTACCTTAAACCTGGCATCAAGAAGGGATCTCTTACTGAAGAAGAGCAGCATCTTGTCATCCGCCTTCAAGCAAAACACGGGAACAAATGGAAGAAAATTGCTGCTGAAGTCCCGGGTCGCACTGCTAAGAGGCTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGGGAAAAAAAGGAGCATAACAAAACAGTTGACCCCATTGACGACAGCAAGTACGATCATATCCTAGAGACTTTTGCTGAAAAGCTAGTGAAAGAGCGCCCTTCGCCATCCTATCTCATGGCTGCATCAAATGGAGCCTTTATTCATACTGATGCACCAGCCCCTACACCAGCTTTGCTTCCTCCATGGCTTTCAAATTCCAATAGCACTACTGCTGTAAGGCCTCCTTCCCCTTCTGTGACACTAAGTCTCTCTCCCTCAACAGTGGCTGCAGCACCTCCTTTTTCATGGTTACAACCCGAGAGAGGGCCAGAGAATGCTCCTCTAGTTTTGGGGAATATAGCACCTCATGGATCTGTTCCAGGTTTTGGTGATAACATGCTCATATCCGAACTGGCTGAGTGCTGTAAAGAGCTGGAAGAGGGGCACCGGGCTTGGGCATCACATAGGAAGGAAGCAGCGTGGAGGTTAAGGAGGGTGGAGCTGCAATTGGACTCAGAGAAGGCATGTCGAAGGAGGGAGAAGATGGAAGAAATTGAGGCAAAGATTAAAGCTCTCAGGGAAGAACAGAAGGCTGCTTTGGATAGAATTGAAGCAGAATACAGGGAGCAGCTAGCAGGATTGAGAAGAGATGCCGAAACCAAGGAGCAGAAACTGGCTGAGCAATGGGCTGCAAAGCACTTGCGGCTTGCCAAGTTTCTAGAGCAGATAGGCTGCAGACCCAGGCTTGCTGAGCCAAATGGAAGGTGA | 1308 | 0.4878 | MKESVAFWALKPTYVSATLMLSHFSLFSRSYNRTRNRGSNCLWRRWWWRKKKSEGEVGAMRLKLTLANSPKDWDLQLEMKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMSTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQHLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKEHNKTVDPIDDSKYDHILETFAEKLVKERPSPSYLMAASNGAFIHTDAPAPTPALLPPWLSNSNSTTAVRPPSPSVTLSLSPSTVAAAPPFSWLQPERGPENAPLVLGNIAPHGSVPGFGDNMLISELAECCKELEEGHRAWASHRKEAAWRLRRVELQLDSEKACRRREKMEEIEAKIKALREEQKAALDRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRLAKFLEQIGCRPRLAEPNGR | 435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi06g1755 | 435 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 77 | 131 | IPR017930 | - | |
| Glsi06g1755 | 435 | CDD | SANT | 84 | 131 | IPR001005 | - | |
| Glsi06g1755 | 435 | FunFam | MYB-related transcription factor | 82 | 136 | - | - | |
| Glsi06g1755 | 435 | Gene3D | - | 140 | 199 | - | - | |
| Glsi06g1755 | 435 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 132 | 186 | IPR017930 | - | |
| Glsi06g1755 | 435 | SMART | sant | 81 | 133 | IPR001005 | - | |
| Glsi06g1755 | 435 | SMART | sant | 136 | 184 | IPR001005 | - | |
| Glsi06g1755 | 435 | ProSiteProfiles | Myb-like domain profile. | 77 | 131 | IPR001005 | - | |
| Glsi06g1755 | 435 | Pfam | Myb-like DNA-binding domain | 85 | 146 | - | - | |
| Glsi06g1755 | 435 | Coils | Coil | 362 | 404 | - | - | |
| Glsi06g1755 | 435 | ProSiteProfiles | Myb-like domain profile. | 132 | 182 | IPR001005 | - | |
| Glsi06g1755 | 435 | Gene3D | - | 82 | 136 | - | - | |
| Glsi06g1755 | 435 | SUPERFAMILY | Homeodomain-like | 82 | 176 | IPR009057 | - | |
| Glsi06g1755 | 435 | PANTHER | PROTEIN ROUGH SHEATH 2 HOMOLOG | 79 | 430 | - | - | |
| Glsi06g1755 | 435 | CDD | SANT | 141 | 182 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi06g1755 | Glsi-ChrGlsi06 | 64468382 | 64471915 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi06g1755 | 79 | 426 | MYB Transcription Factor Family | AT2G37630 | 69.945 | 3.24e-170 | 480 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Glsi06g1755 | Myb_DNA-bind_6 | 9e-14 | CL0123 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Glsi07g1798 | 07 | 59762289 | 59765351 | Glsi06g1755 | 06 | 64468382 | 64471915 | CCT | |
| Glsi06g1755 | 06 | 64468382 | 64471915 | Glsi06g1755 | 06 | 64468382 | 64471915 | ECH |