Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1752 ATGGCTGAGGTGAAATCGGAGGAGTGTTGTCTAGAGAATAAGCAATCTACTGCTGCTTCTAGCTCCTCTGTATCTGAAGGCTGTGCCAGTGTCATACACAAGTCCCCAGGAATATGTAGCCCAGCATCTACATCACCCTCTCATCGGAGGACTACTGGCCCCATAAGACGTGCAAAGGGTGGTTGGACAGCCCAGGAGGATGAGACATTAAGGAATGCTGTTGCAGCTTTTAAGGGCAAGAGTTGGAAGAAAATAGCCGAGTTTTTTCCTGATAGATCAGAAGTGCAATGTCTGCACAGATGGCAAAAGGTTCTTAACCCAGAACTTGTGAAAGGACCTTGGACTCAGGAGGAGGATGACAAAATTGTTGAACTGGTATCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTGCCTGGTCGCATAGGGAAACAGTGTCGGGAGCGATGGCATAATCATCTTAACCCTGACATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATTGGCCCTCATGAATGCTCATCATATACATGGGAATAAATGGGCTGAAATAGCTAAGGTCTTGCGAGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCATTGAAGAAAAAGTTGGAATTCTATTTAGCTACAGGAAAACTTCCGCCAATTCCAAAGAATAGTCCACAAGGTGGTGCCAAAGATGCATTTAGACGCACTGCAACCAAAACAATACTTGTTTGTTCAAATAAAGGGTCAGATGTAGCTGCTGAAACATCATCGGAAACTACAGACATTACTAAGCTGGATGACAGTGGCAAGAATCAGTTAGAGTTCTCAGTTAGAGAGGTTGGTAATTCTCTGAGTGTTCCTGCAAATGAATCTGCTGATTCTGACTGTGTTGAATGCAAGCCTGGATCATCCAATGTAGATCCCAGCTGCAGCAACTTAGAACCAGCATCAAGGGATAATTTTGGAATGATCAGTCAGAACTCTGGACCAAATGGCAAACAAGCAATGGAGAATTGTATAAATAATGGTGAAATGAGCAGTGGCAGGTTAATCAGTACATCTCTTTCACAGGATAGTCCAACTTCTGGTTGTTTGTGTTATGAGCCACCACAGTTGGAGAGTTCAGTTCCTTTAGATTCCCTTTATTTAAGTTTGTGTAGCCTGCAGAATGAGTATATCTCTACTCCAGTGATGTCACCTATTGGTTTCTTCACTCCGCCTTGTGTGAAGGGCAGTGAATTATGCACAGAGACTCCTGAATCAATATTGAAAATGGCTGCTAAAACTTTCCCGTATACTCCTTCCATATTGAGGAAGAGAAGAACTGGAGTCCAAACACAGGTAACTTCTAGTAAAGTTGTGAAAATGGACGGTGAATTTCATACTTCTAATGAACAGGAGGGAACCAAGGATAGTTCTGGTTCTGGGTATGGGAGGCTCTGTGAGAGTCCAGCAAGCAATGACAATAACAAGGACATTCCCAAGAATAAGGCGTTCAATGCATCCCCTCCATACCGGTTAAGATACAAGCGAACAGCAATTGTCAAGTCTGTGGAGAAACAACTTGATTTTGCATTTGACAAAGAGATGCGTGATGGCAAGACAACAGAAAAATCTGCAAGGAGGAACACTGCAATGACTGAAGATCGTTTGCCTGGATCAAAATTGGGAGTGACCTAG 1692 0.4314 MAEVKSEECCLENKQSTAASSSSVSEGCASVIHKSPGICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAAFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHHIHGNKWAEIAKVLRGRTDNAIKNHWNSSLKKKLEFYLATGKLPPIPKNSPQGGAKDAFRRTATKTILVCSNKGSDVAAETSSETTDITKLDDSGKNQLEFSVREVGNSLSVPANESADSDCVECKPGSSNVDPSCSNLEPASRDNFGMISQNSGPNGKQAMENCINNGEMSSGRLISTSLSQDSPTSGCLCYEPPQLESSVPLDSLYLSLCSLQNEYISTPVMSPIGFFTPPCVKGSELCTETPESILKMAAKTFPYTPSILRKRRTGVQTQVTSSKVVKMDGEFHTSNEQEGTKDSSGSGYGRLCESPASNDNNKDIPKNKAFNASPPYRLRYKRTAIVKSVEKQLDFAFDKEMRDGKTTEKSARRNTAMTEDRLPGSKLGVT 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1752 563 FunFam Transcription factor MYB3R-2 164 229 - -
Glsi06g1752 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Glsi06g1752 563 SMART sant 162 210 IPR001005 -
Glsi06g1752 563 SMART sant 110 159 IPR001005 -
Glsi06g1752 563 SMART sant 58 107 IPR001005 -
Glsi06g1752 563 MobiDBLite consensus disorder prediction 459 505 - -
Glsi06g1752 563 MobiDBLite consensus disorder prediction 529 563 - -
Glsi06g1752 563 MobiDBLite consensus disorder prediction 529 549 - -
Glsi06g1752 563 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Glsi06g1752 563 CDD SANT 113 157 IPR001005 -
Glsi06g1752 563 MobiDBLite consensus disorder prediction 483 500 - -
Glsi06g1752 563 FunFam Transcriptional activator Myb isoform A 111 163 - -
Glsi06g1752 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Glsi06g1752 563 PANTHER MYB PROTEIN-RELATED 59 130 - -
Glsi06g1752 563 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Glsi06g1752 563 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Glsi06g1752 563 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Glsi06g1752 563 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Glsi06g1752 563 CDD SANT 62 105 IPR001005 -
Glsi06g1752 563 Gene3D - 58 110 - -
Glsi06g1752 563 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Glsi06g1752 563 Gene3D - 164 229 - -
Glsi06g1752 563 FunFam Transcriptional activator Myb isoform A 58 110 - -
Glsi06g1752 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Glsi06g1752 563 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Glsi06g1752 563 CDD SANT 165 208 IPR001005 -
Glsi06g1752 563 Gene3D - 111 162 - -
Glsi06g1752 563 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1752 Glsi-ChrGlsi06 64422094 64426424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1752 2 545 MYB Transcription Factor Family AT3G09370 48.833 4.18e-152 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi06g1752 Myb_DNA-bind_6 4.5e-18 CL0123